Difference between revisions of "GBDP"

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(Created page with "Category:reaction == Reaction RXN-21833 == * direction: ** left-to-right == Reaction formula == * 1.0 CPD-12860[c] '''=>''' 1.0 CPD-23713[c] == Gene(s) associated...")
(Created page with "Category:reaction == Reaction 6.3.5.7-RXN == * direction: ** left-to-right * common-name: ** glutaminyl-trna synthase (glutamine-hydrolyzing) ** glutamyl-trna(gln) amidotr...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-21833 ==
+
== Reaction 6.3.5.7-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** glutaminyl-trna synthase (glutamine-hydrolyzing)
 +
** glutamyl-trna(gln) amidotransferase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.3.5.7 ec-6.3.5.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CPD-12860]][c] '''=>''' 1.0 [[CPD-23713]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[L-glutamyl-tRNAGln]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Charged-GLN-tRNAs]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ08904]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16279]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05621]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ01848]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ22527]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11756]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08903]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-8191]]:
+
* [[PWY-5921]], glutaminyl-tRNAgln biosynthesis via transamidation:
−
** '''15''' reactions found over '''n.a''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reaction_creator_sjap]]; tool: [[curation]]; comment: curation sterols (girard et al.)
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17522 17522]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03905 R03905]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=glutaminyl-trna synthase (glutamine-hydrolyzing)|glutamyl-trna(gln) amidotransferase}}
 +
{{#set: ec-number=ec-6.3.5.7}}
 +
{{#set: nb gene associated=7}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction comment=curation sterols (girard et al.)}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=reaction_creator_sjap}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:25, 15 January 2021

Reaction 6.3.5.7-RXN

  • direction:
    • left-to-right
  • common-name:
    • glutaminyl-trna synthase (glutamine-hydrolyzing)
    • glutamyl-trna(gln) amidotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5921, glutaminyl-tRNAgln biosynthesis via transamidation:
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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