Difference between revisions of "GBDP"

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(Created page with "Category:reaction == Reaction 6.3.5.7-RXN == * direction: ** left-to-right * common-name: ** glutaminyl-trna synthase (glutamine-hydrolyzing) ** glutamyl-trna(gln) amidotr...")
(Created page with "Category:reaction == Reaction GBDP == * direction: ** reversible * common-name: ** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase == Reaction formula == * 1.0 GUANOSI...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 6.3.5.7-RXN ==
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== Reaction GBDP ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
** glutaminyl-trna synthase (glutamine-hydrolyzing)
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** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
** glutamyl-trna(gln) amidotransferase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/6.3.5.7 ec-6.3.5.7]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[L-glutamyl-tRNAGln]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Charged-GLN-tRNAs]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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* 1.0 [[GUANOSINE-5DP-3DP]][c] '''+''' 1.0 [[WATER]][c] '''<=>''' 1.0 [[GDP]][c] '''+''' 1.0 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[SJ10100]]
* Gene: [[SJ08904]]
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** Category: [[orthology]]
** Category: [[annotation]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ13961]]
* Gene: [[SJ16279]]
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** Category: [[orthology]]
** Category: [[annotation]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ05621]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ01848]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ22527]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ11756]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ08903]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-5921]], glutaminyl-tRNAgln biosynthesis via transamidation:
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: direction=reversible}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17522 17522]
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{{#set: common-name=guanosine-3',5'-bis(diphosphate) 3'-diphosphatase}}
* LIGAND-RXN:
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{{#set: nb gene associated=2}}
** [http://www.genome.jp/dbget-bin/www_bget?R03905 R03905]
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{{#set: nb pathway associated=0}}
{{#set: direction=left-to-right}}
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{{#set: reconstruction category=orthology}}
{{#set: common-name=glutaminyl-trna synthase (glutamine-hydrolyzing)|glutamyl-trna(gln) amidotransferase}}
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{{#set: reconstruction tool=pantograph}}
{{#set: ec-number=ec-6.3.5.7}}
 
{{#set: nb gene associated=7}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:23, 18 March 2021

Reaction GBDP

  • direction:
    • reversible
  • common-name:
    • guanosine-3',5'-bis(diphosphate) 3'-diphosphatase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links