Difference between revisions of "GCVP-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALPHA-AMYL-RXN ALPHA-AMYL-RXN] == * direction: ** left-to-right * common-name: ** alpha-amylase * e...")
 
(Created page with "Category:reaction == Reaction GCVP-RXN == * direction: ** reversible * common-name: ** glycine decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.4.2 ec-1.4.4....")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALPHA-AMYL-RXN ALPHA-AMYL-RXN] ==
+
== Reaction GCVP-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** alpha-amylase
+
** glycine decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.1 ec-3.2.1.1]
+
** [http://enzyme.expasy.org/EC/1.4.4.2 ec-1.4.4.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[1-4-alpha-D-Glucan]][c] '''+''' n [[WATER]][c] '''=>''' n [[1-4-alpha-D-Glucan]][c]
+
* 1 [[GLY]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00547]]
+
* Gene: [[SJ08557]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06358]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[GLYCLEAV-PWY]], glycine cleavage:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* METANETX-RXN : MNXR115908
−
{{#set: common-name=alpha-amylase}}
+
* RHEA:
−
{{#set: ec-number=ec-3.2.1.1}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24307 24307]
−
{{#set: nb gene associated=1}}
+
* LIGAND-RXN:
−
{{#set: nb pathway associated=0}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
−
{{#set: reconstruction category=annotation}}
+
* UNIPROT:
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P26969 P26969]
 +
** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
 +
** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
 +
** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
 +
** [http://www.uniprot.org/uniprot/P23378 P23378]
 +
** [http://www.uniprot.org/uniprot/P33195 P33195]
 +
** [http://www.uniprot.org/uniprot/O80988 O80988]
 +
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
 +
** [http://www.uniprot.org/uniprot/O32915 O32915]
 +
** [http://www.uniprot.org/uniprot/O22575 O22575]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=glycine decarboxylase}}
 +
{{#set: ec-number=ec-1.4.4.2}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction GCVP-RXN

  • direction:
    • reversible
  • common-name:
    • glycine decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYCLEAV-PWY, glycine cleavage:
    • 3 reactions found over 3 reactions in the full pathway
  • GLYCINE-SYN2-PWY, glycine biosynthesis II:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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