Difference between revisions of "GCVP-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] == * direction: ** left-to-right * common-name: ** thymidyla...")
(Created page with "Category:reaction == Reaction GCVP-RXN == * direction: ** reversible * common-name: ** glycine decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.4.2 ec-1.4.4....")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] ==
+
== Reaction GCVP-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** thymidylate synthase
+
** glycine decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.45 ec-2.1.1.45]
+
** [http://enzyme.expasy.org/EC/1.4.4.2 ec-1.4.4.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DUMP]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''=>''' 1 [[DIHYDROFOLATE-GLU-N]][c] '''+''' 1 [[TMP]][c]
+
* 1 [[GLY]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19601]]
+
* Gene: [[SJ08557]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06358]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 16: Line 19:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
+
* [[GLYCLEAV-PWY]], glycine cleavage:
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7199 PWY-7199]
+
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 
−
** '''14''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR115908
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12105 12105]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24307 24307]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02101 R02101]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19368 P19368]
+
** [http://www.uniprot.org/uniprot/P26969 P26969]
−
** [http://www.uniprot.org/uniprot/Q07422 Q07422]
+
** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
−
** [http://www.uniprot.org/uniprot/P47469 P47469]
+
** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
−
** [http://www.uniprot.org/uniprot/Q9JT57 Q9JT57]
+
** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
−
** [http://www.uniprot.org/uniprot/P42326 P42326]
+
** [http://www.uniprot.org/uniprot/P23378 P23378]
−
** [http://www.uniprot.org/uniprot/O02604 O02604]
+
** [http://www.uniprot.org/uniprot/P33195 P33195]
−
** [http://www.uniprot.org/uniprot/P07382 P07382]
+
** [http://www.uniprot.org/uniprot/O80988 O80988]
−
** [http://www.uniprot.org/uniprot/P16126 P16126]
+
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
−
** [http://www.uniprot.org/uniprot/P13922 P13922]
+
** [http://www.uniprot.org/uniprot/O32915 O32915]
−
** [http://www.uniprot.org/uniprot/P20712 P20712]
+
** [http://www.uniprot.org/uniprot/O22575 O22575]
−
** [http://www.uniprot.org/uniprot/P11044 P11044]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P45350 P45350]
+
{{#set: common-name=glycine decarboxylase}}
−
** [http://www.uniprot.org/uniprot/P45352 P45352]
+
{{#set: ec-number=ec-1.4.4.2}}
−
** [http://www.uniprot.org/uniprot/P51820 P51820]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P0C0M4 P0C0M4]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/Q27828 Q27828]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P09249 P09249]
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
** [http://www.uniprot.org/uniprot/P12462 P12462]
 
−
** [http://www.uniprot.org/uniprot/P07606 P07606]
 
−
** [http://www.uniprot.org/uniprot/P00471 P00471]
 
−
** [http://www.uniprot.org/uniprot/P0A884 P0A884]
 
−
** [http://www.uniprot.org/uniprot/P00469 P00469]
 
−
** [http://www.uniprot.org/uniprot/O81395 O81395]
 
−
** [http://www.uniprot.org/uniprot/Q05763 Q05763]
 
−
** [http://www.uniprot.org/uniprot/Q39687 Q39687]
 
−
** [http://www.uniprot.org/uniprot/Q9YTJ6 Q9YTJ6]
 
−
** [http://www.uniprot.org/uniprot/P06785 P06785]
 
−
** [http://www.uniprot.org/uniprot/P04818 P04818]
 
−
** [http://www.uniprot.org/uniprot/P07607 P07607]
 
−
** [http://www.uniprot.org/uniprot/P13100 P13100]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=thymidylate synthase}}
 
−
{{#set: ec-number=ec-2.1.1.45}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=8}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction GCVP-RXN

  • direction:
    • reversible
  • common-name:
    • glycine decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYCLEAV-PWY, glycine cleavage:
    • 3 reactions found over 3 reactions in the full pathway
  • GLYCINE-SYN2-PWY, glycine biosynthesis II:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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