Difference between revisions of "GCVT-RXN"

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(Created page with "Category:reaction == Reaction RXN-8340 == * direction: ** left-to-right * common-name: ** gtp 3',8'-cyclase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.99.22 ec-4.1.9...")
(Created page with "Category:reaction == Reaction GCVT-RXN == * direction: ** reversible * common-name: ** aminomethyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1....")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8340 ==
+
== Reaction GCVT-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** gtp 3',8'-cyclase
+
** aminomethyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.99.22 ec-4.1.99.22]
+
** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1.2.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Donor-H2]][c] '''+''' 1 [[GTP]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[Acceptor]][c] '''+''' 1 [[CH33ADO]][c] '''+''' 1 [[CPD-19179]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17375]]
+
* Gene: [[SJ16345]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16278]]
+
* Gene: [[SJ19914]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08557]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 19: Line 22:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6823]], molybdenum cofactor biosynthesis:
+
* [[GLYCLEAV-PWY]], glycine cleavage:
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115909
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26378 26378]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
−
* LIGAND-RXN:
+
* UNIPROT:
−
** [http://www.genome.jp/dbget-bin/www_bget?R09394 R09394]
+
** [http://www.uniprot.org/uniprot/P25285 P25285]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P28337 P28337]
−
{{#set: common-name=gtp 3',8'-cyclase}}
+
** [http://www.uniprot.org/uniprot/P27248 P27248]
−
{{#set: ec-number=ec-4.1.99.22}}
+
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
 +
** [http://www.uniprot.org/uniprot/P48728 P48728]
 +
** [http://www.uniprot.org/uniprot/P49364 P49364]
 +
** [http://www.uniprot.org/uniprot/P49095 P49095]
 +
** [http://www.uniprot.org/uniprot/P49363 P49363]
 +
** [http://www.uniprot.org/uniprot/P54260 P54260]
 +
** [http://www.uniprot.org/uniprot/P49361 P49361]
 +
** [http://www.uniprot.org/uniprot/P49362 P49362]
 +
** [http://www.uniprot.org/uniprot/O49954 O49954]
 +
** [http://www.uniprot.org/uniprot/P93256 P93256]
 +
** [http://www.uniprot.org/uniprot/O32955 O32955]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=aminomethyltransferase}}
 +
{{#set: ec-number=ec-2.1.2.10}}
 +
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction GCVT-RXN

  • direction:
    • reversible
  • common-name:
    • aminomethyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYCLEAV-PWY, glycine cleavage:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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