Difference between revisions of "GDP"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN0-623 TRANS-RXN0-623] == * direction: ** left-to-right * common-name: ** long-chain fatty...")
(Created page with "Category:metabolite == Metabolite GDP == * common-name: ** gdp * smiles: ** c(op(=o)([o-])op(=o)([o-])[o-])c1(oc(c(o)c(o)1)n3(c=nc2(c(=o)nc(n)=nc=23))) * inchi-key: ** qgw...")
 
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN0-623 TRANS-RXN0-623] ==
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== Metabolite GDP ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** long-chain fatty acid-coa ligase
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** gdp
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** fatty acyl-coa synthetase (transporting)
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* smiles:
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* ec-number:
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** c(op(=o)([o-])op(=o)([o-])[o-])c1(oc(c(o)c(o)1)n3(c=nc2(c(=o)nc(n)=nc=23)))
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** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
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* inchi-key:
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== Reaction formula ==
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** qgwndrxfnxrzmb-uuokfmhzsa-k
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* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD66-39]][e] '''+''' 1 [[PROTON]][e] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
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* molecular-weight:
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== Gene(s) associated with this reaction  ==
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** 440.179
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== Reaction(s) known to consume the compound ==
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* [[2.4.1.221-RXN]]
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* [[ATGD]]
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* [[DGOTO]]
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* [[GBDP]]
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* [[GDPKIN-RXN]]
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* [[GDPPYPHOSKIN-RXN]]
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* [[GDPREDUCT-RXN]]
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* [[GTPOP]]
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* [[GUANOSINE-DIPHOSPHATASE-RXN]]
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* [[MANNPGUANYLTRANGDP-RXN]]
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* [[RXN-12486]]
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* [[RXN-14117]]
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* [[RXN-15268]]
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* [[RXN0-748]]
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* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
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* [[SUCL_LPAREN_gdp_RPAREN_m]]
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== Reaction(s) known to produce the compound ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[SJ05591]]
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* [[2.4.1.142-RXN]]
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** Category: [[annotation]]
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* [[2.4.1.221-RXN]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[2.4.1.68-RXN]]
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* Gene: [[SJ08690]]
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* [[2.4.1.83-RXN]]
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** Category: [[annotation]]
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* [[ADENYLOSUCCINATE-SYNTHASE-RXN]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[AGPT]]
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* Gene: [[SJ08692]]
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* [[ALGINATE-SYNTHASE-RXN]]
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** Category: [[annotation]]
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* [[FE2GTPabc]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[GALACTOSIDE-2-L-FUCOSYLTRANSFERASE-RXN]]
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* Gene: [[SJ13972]]
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* [[GALACTOSIDE-3-FUCOSYLTRANSFERASE-RXN]]
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** Category: [[annotation]]
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* [[GBDP]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[GTCY]]
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** Category: [[orthology]]
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* [[GTUP]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[GUANYL-KIN-RXN]]
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* Gene: [[SJ03650]]
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* [[MANNPGUANYLTRANGDP-RXN]]
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** Category: [[annotation]]
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* [[PPGPPSYN-RXN]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-12486]]
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** Category: [[orthology]]
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* [[RXN-15268]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN-16602]]
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* Gene: [[SJ08691]]
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* [[RXN-5462]]
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** Category: [[annotation]]
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* [[RXN-5463]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-5464]]
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** Category: [[orthology]]
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* [[RXN-8988]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN-9463]]
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* [[RXN0-5462]]
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* [[RXNQT-4141]]
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* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
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* [[SUCL_LPAREN_gdp_RPAREN_m]]
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* [[URKI-RXN]]
 
</div>
 
</div>
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== Pathway(s) ==
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== Reaction(s) of unknown directionality ==
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== Reconstruction information  ==
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{{#set: common-name=gdp}}
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: inchi-key=inchikey=qgwndrxfnxrzmb-uuokfmhzsa-k}}
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: molecular-weight=440.179}}
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== External links  ==
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=fatty acyl-coa synthetase (transporting)|long-chain fatty acid-coa ligase}}
 
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{{#set: ec-number=ec-6.2.1.3}}
 
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{{#set: nb gene associated=6}}
 
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{{#set: nb pathway associated=0}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Latest revision as of 11:15, 18 March 2021

Metabolite GDP

  • common-name:
    • gdp
  • smiles:
    • c(op(=o)([o-])op(=o)([o-])[o-])c1(oc(c(o)c(o)1)n3(c=nc2(c(=o)nc(n)=nc=23)))
  • inchi-key:
    • qgwndrxfnxrzmb-uuokfmhzsa-k
  • molecular-weight:
    • 440.179

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=GDP&oldid=138609"