Difference between revisions of "GDP-L-GALACTOSE"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2145 RXN0-2145] == * direction: ** left-to-right * common-name: ** cis-δ5-dodecenoyl-[ac...")
(Created page with "Category:gene == Gene SJ02723 == * transcription-direction: ** negative * right-end-position: ** 510103 * left-end-position: ** 508438 * centisome-position: ** 95.15590...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2145 RXN0-2145] ==
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== Gene SJ02723 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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* common-name:
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* right-end-position:
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** cis-δ5-dodecenoyl-[acp]:nad+ oxidoreductase
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** 510103
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* ec-number:
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* left-end-position:
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** [http://enzyme.expasy.org/EC/1.3.1.9 ec-1.3.1.9]
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** 508438
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== Reaction formula ==
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* centisome-position:
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* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Trans-D3-cis-D5-dodecenoyl-ACPs]][c] '''=>''' 1 [[Cis-Delta5-dodecenoyl-ACPs]][c] '''+''' 1 [[NAD]][c]
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** 95.15590   
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[SJ03883]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) associated ==
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* [[RETINOL-DEHYDROGENASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-10841]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ00320]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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* [[RXN-12581]]
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* [[PWY-7858]], (5Z)-dodecenoate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7858 PWY-7858]
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** Category: [[annotation]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY0-862]], (5Z)-dodecenoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
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== Pathway(s) associated ==
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6857]]
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== Reconstruction information  ==
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6861]]
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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** '''1''' reactions found over '''12''' reactions in the full pathway
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== External links  ==
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* [[PWY-6872]]
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{{#set: direction=left-to-right}}
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** '''1''' reactions found over '''4''' reactions in the full pathway
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{{#set: common-name=cis-δ5-dodecenoyl-[acp]:nad+ oxidoreductase}}
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{{#set: transcription-direction=negative}}
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{{#set: ec-number=ec-1.3.1.9}}
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{{#set: right-end-position=510103}}
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{{#set: nb gene associated=2}}
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{{#set: left-end-position=508438}}
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{{#set: nb pathway associated=2}}
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{{#set: centisome-position=95.15590    }}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: nb reaction associated=3}}
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{{#set: reconstruction comment=n.a}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 09:28, 27 August 2019

Gene SJ02723

  • transcription-direction:
    • negative
  • right-end-position:
    • 510103
  • left-end-position:
    • 508438
  • centisome-position:
    • 95.15590

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6857
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6861
    • 1 reactions found over 12 reactions in the full pathway
  • PWY-6872
    • 1 reactions found over 4 reactions in the full pathway




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