Difference between revisions of "GDPKIN-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7466 PWY-7466] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-40674 tax-4...")
 
(Created page with "Category:reaction == Reaction GDPKIN-RXN == * direction: ** left-to-right * common-name: ** nucleoside diphosphate kinase ** gdp kinase * ec-number: ** [http://enzyme.expa...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7466 PWY-7466] ==
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== Reaction GDPKIN-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-40674 tax-40674]
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** left-to-right
 
* common-name:
 
* common-name:
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** acetone degradation iii (to propane-1,2-diol)
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** nucleoside diphosphate kinase
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== Reaction(s) found ==
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** gdp kinase
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* [[RXN-8630]]
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* ec-number:
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== Reaction(s) not found ==
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** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETOACETATE-DECARBOXYLASE-RXN ACETOACETATE-DECARBOXYLASE-RXN]
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8632 RXN-8632]
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* 1 [[ATP]][c] '''+''' 1 [[GDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[GTP]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=ISOPROPANOL-DEHYDROGENASE-NADP+-RXN ISOPROPANOL-DEHYDROGENASE-NADP+-RXN]
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== Gene(s) associated with this reaction  ==
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{{#set: taxonomic-range=tax-40674}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=acetone degradation iii (to propane-1,2-diol)}}
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* Gene: [[SJ20076]]
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{{#set: nb reaction found=1}}
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** Category: [[annotation]]
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{{#set: completion rate=0.25}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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{{#set: nb total reaction=4}}
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* Gene: [[SJ10125]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ07124]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ21816]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ08159]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ20794]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ21967]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ16893]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ21705]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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</div>
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== Pathway(s) ==
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* [[PPGPPMET-PWY]], ppGpp metabolism:
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis:
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* METANETX-RXN : MNXR96119
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27687 27687]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00330 R00330]
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{{#set: direction=left-to-right}}
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{{#set: common-name=gdp kinase|nucleoside diphosphate kinase}}
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{{#set: ec-number=ec-2.7.4.6}}
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{{#set: nb gene associated=9}}
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{{#set: nb pathway associated=2}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction GDPKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • nucleoside diphosphate kinase
    • gdp kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PPGPPMET-PWY, ppGpp metabolism:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7221, guanosine ribonucleotides de novo biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR96119
  • RHEA:
  • LIGAND-RXN:





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