Difference between revisions of "GDPMANDEHYDRA-RXN"

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(Created page with "Category:reaction == Reaction RXN-1382 == * direction: ** reversible * common-name: ** l-serine-phosphatidylethanolamine phosphatidyltransferase * ec-number: ** [http://en...")
(Created page with "Category:reaction == Reaction GDPMANDEHYDRA-RXN == * direction: ** left-to-right * common-name: ** gdp-mannose 4,6-dehydratase * ec-number: ** [http://enzyme.expasy.org/EC...")
 
(5 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-1382 ==
+
== Reaction GDPMANDEHYDRA-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** l-serine-phosphatidylethanolamine phosphatidyltransferase
+
** gdp-mannose 4,6-dehydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.8.29 ec-2.7.8.29]
+
** [http://enzyme.expasy.org/EC/4.2.1.47 ec-4.2.1.47]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-1-PHOSPHATIDYL-ETHANOLAMINE]][c] '''+''' 1 [[SER]][c] '''<=>''' 1 [[ETHANOL-AMINE]][c] '''+''' 1 [[L-1-PHOSPHATIDYL-SERINE]][c]
+
* 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19545]]
+
* Gene: [[SJ04008]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21655]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7506]], phosphatidylserine biosynthesis II:
+
* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose):
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PHOSLIPSYN2-PWY]], superpathway of phospholipid biosynthesis II (plants):
+
* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis:
−
** '''13''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6273]], phosphatidylethanolamine biosynthesis III:
+
* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5739]], GDP-D-perosamine biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7573]], GDP-mycosamine biosynthesis:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5740]], GDP-L-colitose biosynthesis:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR100377
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27609 27609]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23821 23821]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07376 R07376]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=l-serine-phosphatidylethanolamine phosphatidyltransferase}}
+
** [http://www.uniprot.org/uniprot/Q84439 Q84439]
−
{{#set: ec-number=ec-2.7.8.29}}
+
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: common-name=gdp-mannose 4,6-dehydratase}}
−
{{#set: nb pathway associated=3}}
+
{{#set: ec-number=ec-4.2.1.47}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: nb pathway associated=6}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction GDPMANDEHYDRA-RXN

  • direction:
    • left-to-right
  • common-name:
    • gdp-mannose 4,6-dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose):
    • 2 reactions found over 3 reactions in the full pathway
  • GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5738, GDP-6-deoxy-D-talose biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5739, GDP-D-perosamine biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7573, GDP-mycosamine biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5740, GDP-L-colitose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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