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| − | [[Category:reaction]] | + | [[Category:metabolite]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9679 RXN-9679] == | + | == Metabolite GERANYLGERANYL-PP == |
| − | * direction:
| |
| − | ** left-to-right
| |
| | * common-name: | | * common-name: |
| − | ** sarcosine n-methyltransferase | + | ** geranylgeranyl diphosphate |
| − | ** sarcosine-dimethylglycine methyltransferase
| + | * smiles: |
| − | * synonymous: | + | ** cc(c)=cccc(c)=cccc(c)=cccc(c)=ccop(=o)([o-])op(=o)([o-])[o-] |
| − | ** glycine-sarcosine methyltransferase | + | * inchi-key: |
| − | ** sdmt
| + | ** oinneunvozhbox-qircyjposa-k |
| − | ** s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
| + | * molecular-weight: |
| − | ** gmt
| + | ** 447.424 |
| − | ** apgsmt
| + | == Reaction(s) known to consume the compound == |
| − | ** gsdmt
| + | * [[2.5.1.32-RXN]] |
| − | ** glycine sarcosine dimethylglycine n-methyltransferase
| + | * [[2.5.1.41-RXN]] |
| − | ** s-adenosyl-l-methionine:sarcosine n-methyltransferase
| + | * [[2.5.1.42-RXN]] |
| − | ** apdmt
| + | * [[RXN-10625]] |
| − | ** glycine sarcosine n-methyltransferase
| + | * [[RXN-11486]] |
| − | ** sarcosine dimethylglycine n-methyltransferase
| + | * [[RXN-11488]] |
| − | ** gsmt
| + | * [[RXN-13323]] |
| − | == Reaction formula == | + | * [[RXN-14929]] |
| − | * 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[SARCOSINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[PROTON]][c]
| + | * [[RXN-17480]] |
| − | == Gene(s) associated with this reaction == | + | * [[RXN-3701]] |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * [[RXN-7658]] |
| − | * Gene: [[SJ11087]]
| + | * [[RXN-7663]] |
| − | ** Category: [[annotation]]
| + | * [[RXN-7673]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | * [[RXN-8788]] |
| − | * Gene: [[SJ12128]] | + | == Reaction(s) known to produce the compound == |
| − | ** Category: [[annotation]] | + | * [[FARNESYLTRANSTRANSFERASE-RXN]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | * [[GGPS]] |
| − | * Gene: [[SJ02540]] | + | * [[RXN-3701]] |
| − | ** Category: [[annotation]] | + | * [[RXN-7658]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | * [[RXN-7673]] |
| − | * Gene: [[SJ02539]]
| + | == Reaction(s) of unknown directionality == |
| − | ** Category: [[annotation]] | + | {{#set: common-name=geranylgeranyl diphosphate}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | {{#set: inchi-key=inchikey=oinneunvozhbox-qircyjposa-k}} |
| − | * Gene: [[SJ12119]]
| + | {{#set: molecular-weight=447.424}} |
| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | |
| − | * Gene: [[SJ10116]]
| |
| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | |
| − | * Gene: [[SJ12116]]
| |
| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | |
| − | * Gene: [[SJ03081]]
| |
| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | |
| − | * Gene: [[SJ18177]]
| |
| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | |
| − | * Gene: [[SJ12118]]
| |
| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | |
| − | * Gene: [[SJ14716]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | </div>
| |
| − | == Pathway(s) == | |
| − | * [[P541-PWY]], glycine betaine biosynthesis IV (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=P541-PWY P541-PWY] | |
| − | ** '''3''' reactions found over '''3''' reactions in the full pathway
| |
| − | * [[PWY-6004]], glycine betaine biosynthesis V (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6004 PWY-6004] | |
| − | ** '''3''' reactions found over '''3''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | |
| − | == External links == | |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15454 15454]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R07243 R07243]
| |
| − | {{#set: direction=left-to-right}}
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| − | {{#set: common-name=sarcosine-dimethylglycine methyltransferase|sarcosine n-methyltransferase}} | |
| − | {{#set: synonymous=glycine-sarcosine methyltransferase|gmt|sarcosine dimethylglycine n-methyltransferase|gsmt|s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase|apdmt|gsdmt|glycine sarcosine dimethylglycine n-methyltransferase|glycine sarcosine n-methyltransferase|apgsmt|sdmt|s-adenosyl-l-methionine:sarcosine n-methyltransferase}} | |
| − | {{#set: nb gene associated=11}} | |
| − | {{#set: nb pathway associated=2}}
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| − | {{#set: reconstruction category=annotation}}
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| − | {{#set: reconstruction tool=pathwaytools}}
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| − | {{#set: reconstruction comment=n.a}}
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| − | {{#set: reconstruction source=saccharina_japonica_genome}}
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