Difference between revisions of "GLC"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.41-RXN 2.3.1.41-RXN] == * direction: ** reversible * common-name: ** 3-oxoacyl-[acyl-carrier-...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16293 RXN-16293] == * direction: ** left-to-right * common-name: ** dapdiamide c synthase * ec-...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.41-RXN 2.3.1.41-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16293 RXN-16293] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
+
** dapdiamide c synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/6.3.2.47 ec-6.3.2.47]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACYL-ACP]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CPD-18312]][c] '''+''' 1 [[LEU]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-17541]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ11003]]
−
* Gene: [[SJ18059]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06617]]
+
* Gene: [[SJ05967]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00005]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15984]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7706]], dapdiamides biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7706 PWY-7706]
 +
** '''4''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02768 R02768]
+
{{#set: common-name=dapdiamide c synthase}}
−
{{#set: direction=reversible}}
+
{{#set: ec-number=ec-6.3.2.47}}
−
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase}}
+
{{#set: nb gene associated=2}}
−
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb gene associated=7}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction RXN-16293

  • direction:
    • left-to-right
  • common-name:
    • dapdiamide c synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7706, dapdiamides biosynthesis: PWY-7706
    • 4 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=GLC&oldid=22252"