Difference between revisions of "GLUCONATE"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-484 RXN66-484] == * direction: ** left-to-right * common-name: ** pristanoyl-coa ligase ** lo...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == * direction: ** reversible * common-name: ** succinyl-coa synthet...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-484 RXN66-484] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** pristanoyl-coa ligase
+
** succinyl-coa synthetase
−
** long-chain fatty acid-coa ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/6.2.1.5 ec-6.2.1.5]
 +
* synonymous:
 +
** succinyl coa synthesis
 +
** succinate thiokinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PRISTANATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-14675]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ21782]]
−
* Gene: [[SJ08690]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03650]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05591]]
+
* Gene: [[SJ03269]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13972]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ08691]]
+
== Pathway(s)  ==
−
** Category: [[annotation]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
−
** Category: [[orthology]]
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
−
* Gene: [[SJ08692]]
+
** '''6''' reactions found over '''12''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s)  ==
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=long-chain fatty acid-coa ligase|pristanoyl-coa ligase}}
+
* RHEA:
−
{{#set: ec-number=ec-6.2.1.3}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17664 17664]
−
{{#set: nb gene associated=6}}
+
* LIGAND-RXN:
−
{{#set: nb pathway associated=0}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
−
{{#set: reconstruction category=orthology|annotation}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O28098 O28098]
 +
** [http://www.uniprot.org/uniprot/P53594 P53594]
 +
** [http://www.uniprot.org/uniprot/O28733 O28733]
 +
** [http://www.uniprot.org/uniprot/P45101 P45101]
 +
** [http://www.uniprot.org/uniprot/P45102 P45102]
 +
** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
 +
** [http://www.uniprot.org/uniprot/Q58643 Q58643]
 +
** [http://www.uniprot.org/uniprot/O26663 O26663]
 +
** [http://www.uniprot.org/uniprot/P80886 P80886]
 +
** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
 +
** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
 +
** [http://www.uniprot.org/uniprot/P80865 P80865]
 +
** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
 +
** [http://www.uniprot.org/uniprot/O67729 O67729]
 +
** [http://www.uniprot.org/uniprot/O67546 O67546]
 +
** [http://www.uniprot.org/uniprot/P53593 P53593]
 +
** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
 +
** [http://www.uniprot.org/uniprot/P0A836 P0A836]
 +
** [http://www.uniprot.org/uniprot/O82662 O82662]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=succinyl-coa synthetase}}
 +
{{#set: ec-number=ec-6.2.1.5}}
 +
{{#set: synonymous=succinate thiokinase|succinyl coa synthesis}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=12}}
 +
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}}

Revision as of 09:29, 27 August 2019

Reaction SUCCCOASYN-RXN

  • direction:
    • reversible
  • common-name:
    • succinyl-coa synthetase
  • ec-number:
  • synonymous:
    • succinyl coa synthesis
    • succinate thiokinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P42-PWY, incomplete reductive TCA cycle: P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-5538, pyruvate fermentation to acetate VI: PWY-5538
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5537, pyruvate fermentation to acetate V: PWY-5537
    • 2 reactions found over 2 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 19 reactions in the full pathway

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=GLUCONATE&oldid=35593"