Difference between revisions of "GLURS-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] == * direction: ** reversible * common-name: ** dna topoisomerase ** top...")
 
(Created page with "Category:reaction == Reaction GLURS-RXN == * direction: ** left-to-right * common-name: ** glutamate-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.17 ec-6...")
 
(9 intermediate revisions by 5 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] ==
+
== Reaction GLURS-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** dna topoisomerase
+
** glutamate-trna ligase
−
** topoisomerase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.99.1.2 ec-5.99.1.2]
+
** [http://enzyme.expasy.org/EC/6.1.1.17 ec-6.1.1.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Negatively-super-coiled-DNAs]][c] '''<=>''' 1 [[Relaxed-DNAs]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[GLT-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLT-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ12903]]
−
* Gene: [[SJ04827]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13260]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02796]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16900]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03763]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04829]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19115]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02496]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ07890]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15546]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13261]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19269]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[TRNA-CHARGING-PWY]], tRNA charging:
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115926
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23541 23541]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05578 R05578]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7M0H8 Q7M0H8]
+
** [http://www.uniprot.org/uniprot/P47700 P47700]
−
** [http://www.uniprot.org/uniprot/Q07050 Q07050]
+
** [http://www.uniprot.org/uniprot/O52914 O52914]
−
** [http://www.uniprot.org/uniprot/Q9JWZ5 Q9JWZ5]
+
** [http://www.uniprot.org/uniprot/P43818 P43818]
−
** [http://www.uniprot.org/uniprot/Q59046 Q59046]
+
** [http://www.uniprot.org/uniprot/O26157 O26157]
−
** [http://www.uniprot.org/uniprot/Q9PLZ2 Q9PLZ2]
+
** [http://www.uniprot.org/uniprot/Q9ZLJ1 Q9ZLJ1]
−
** [http://www.uniprot.org/uniprot/P47368 P47368]
+
** [http://www.uniprot.org/uniprot/O25360 O25360]
−
** [http://www.uniprot.org/uniprot/Q9CG80 Q9CG80]
+
** [http://www.uniprot.org/uniprot/O51345 O51345]
−
** [http://www.uniprot.org/uniprot/P43704 P43704]
+
** [http://www.uniprot.org/uniprot/Q9Z7Z3 Q9Z7Z3]
−
** [http://www.uniprot.org/uniprot/P43012 P43012]
+
** [http://www.uniprot.org/uniprot/P96551 P96551]
−
** [http://www.uniprot.org/uniprot/P0A620 P0A620]
+
** [http://www.uniprot.org/uniprot/O67271 O67271]
−
** [http://www.uniprot.org/uniprot/P04786 P04786]
+
** [http://www.uniprot.org/uniprot/O83679 O83679]
−
** [http://www.uniprot.org/uniprot/P13099 P13099]
+
** [http://www.uniprot.org/uniprot/Q9ZLZ7 Q9ZLZ7]
−
** [http://www.uniprot.org/uniprot/P06612 P06612]
+
** [http://www.uniprot.org/uniprot/Q9PP78 Q9PP78]
−
** [http://www.uniprot.org/uniprot/P11387 P11387]
+
** [http://www.uniprot.org/uniprot/Q9CDZ7 Q9CDZ7]
−
** [http://www.uniprot.org/uniprot/P07799 P07799]
+
** [http://www.uniprot.org/uniprot/O84451 O84451]
−
** [http://www.uniprot.org/uniprot/P93119 P93119]
+
** [http://www.uniprot.org/uniprot/Q9X2I8 Q9X2I8]
−
** [http://www.uniprot.org/uniprot/O13463 O13463]
+
** [http://www.uniprot.org/uniprot/Q9JWT4 Q9JWT4]
−
** [http://www.uniprot.org/uniprot/Q94705 Q94705]
+
** [http://www.uniprot.org/uniprot/Q9ZDK3 Q9ZDK3]
−
** [http://www.uniprot.org/uniprot/Q04750 Q04750]
+
** [http://www.uniprot.org/uniprot/Q9X172 Q9X172]
−
** [http://www.uniprot.org/uniprot/P14294 P14294]
+
** [http://www.uniprot.org/uniprot/Q58772 Q58772]
−
** [http://www.uniprot.org/uniprot/P30181 P30181]
+
** [http://www.uniprot.org/uniprot/Q9ZCT8 Q9ZCT8]
−
** [http://www.uniprot.org/uniprot/P34185 P34185]
+
** [http://www.uniprot.org/uniprot/P59690 P59690]
−
** [http://www.uniprot.org/uniprot/P30189 P30189]
+
** [http://www.uniprot.org/uniprot/Q43768 Q43768]
−
** [http://www.uniprot.org/uniprot/P40114 P40114]
+
** [http://www.uniprot.org/uniprot/Q43794 Q43794]
−
** [http://www.uniprot.org/uniprot/P41511 P41511]
+
** [http://www.uniprot.org/uniprot/P46655 P46655]
−
** [http://www.uniprot.org/uniprot/Q8I3Z9 Q8I3Z9]
+
** [http://www.uniprot.org/uniprot/P48525 P48525]
−
** [http://www.uniprot.org/uniprot/Q26024 Q26024]
+
** [http://www.uniprot.org/uniprot/P75114 P75114]
−
** [http://www.uniprot.org/uniprot/Q27529 Q27529]
+
** [http://www.uniprot.org/uniprot/Q49061 Q49061]
−
** [http://www.uniprot.org/uniprot/P41512 P41512]
+
** [http://www.uniprot.org/uniprot/P22249 P22249]
−
** [http://www.uniprot.org/uniprot/O24307 O24307]
+
** [http://www.uniprot.org/uniprot/P22250 P22250]
−
** [http://www.uniprot.org/uniprot/P71196 P71196]
+
** [http://www.uniprot.org/uniprot/P04805 P04805]
−
** [http://www.uniprot.org/uniprot/O70157 O70157]
+
** [http://www.uniprot.org/uniprot/P07814 P07814]
−
** [http://www.uniprot.org/uniprot/O60126 O60126]
+
** [http://www.uniprot.org/uniprot/P15189 P15189]
−
** [http://www.uniprot.org/uniprot/O61660 O61660]
+
** [http://www.uniprot.org/uniprot/O65253 O65253]
 +
** [http://www.uniprot.org/uniprot/O68055 O68055]
 +
** [http://www.uniprot.org/uniprot/O68142 O68142]
 +
** [http://www.uniprot.org/uniprot/O86528 O86528]
 +
** [http://www.uniprot.org/uniprot/O13775 O13775]
 +
** [http://www.uniprot.org/uniprot/Q9ZFA3 Q9ZFA3]
 +
** [http://www.uniprot.org/uniprot/O82462 O82462]
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=dna topoisomerase|topoisomerase}}
+
{{#set: common-name=glutamate-trna ligase}}
−
{{#set: ec-number=ec-5.99.1.2}}
+
{{#set: ec-number=ec-6.1.1.17}}
−
{{#set: nb gene associated=12}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction GLURS-RXN

  • direction:
    • left-to-right
  • common-name:
    • glutamate-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate):
    • 6 reactions found over 6 reactions in the full pathway
  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=GLURS-RXN&oldid=139858"