Difference between revisions of "GLUTKIN-RXN"

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(Created page with "Category:reaction == Reaction 1.1.1.39-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase (decarboxylating) (nad+) ** oxaloacetate decarboxylase *...")
(Created page with "Category:reaction == Reaction GLUTKIN-RXN == * direction: ** left-to-right * common-name: ** glutamate 5-kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.2.11 ec-2....")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.1.1.39-RXN ==
+
== Reaction GLUTKIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** malate dehydrogenase (decarboxylating) (nad+)
+
** glutamate 5-kinase
−
** oxaloacetate decarboxylase
 
−
** malate dehydrogenase, nad-requiring
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
+
** [http://enzyme.expasy.org/EC/2.7.2.11 ec-2.7.2.11]
−
** [http://enzyme.expasy.org/EC/1.1.1.39 ec-1.1.1.39]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[L-GLUTAMATE-5-P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14191]]
+
* Gene: [[SJ02923]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13180]]
+
* Gene: [[SJ06433]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ11643]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22406]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09366]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7118]], chitin deacetylation:
+
* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis:
−
** '''5''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
+
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II:
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
+
* [[PWY-3341]], L-proline biosynthesis III (from L-ornithine):
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** '''4''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7686]], L-malate degradation II:
+
* [[PROSYN-PWY]], L-proline biosynthesis I (from L-glutamate):
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-3641]], L-carnitine degradation III:
+
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR101446
+
* METANETX-RXN : MNXR100277
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12654 12654]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14878 14878]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00239 R00239]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q48662 Q48662]
+
** [http://www.uniprot.org/uniprot/Q9PJ29 Q9PJ29]
−
** [http://www.uniprot.org/uniprot/Q9PN12 Q9PN12]
+
** [http://www.uniprot.org/uniprot/Q9CF72 Q9CF72]
−
** [http://www.uniprot.org/uniprot/O59029 O59029]
+
** [http://www.uniprot.org/uniprot/Q9JUK7 Q9JUK7]
−
** [http://www.uniprot.org/uniprot/P16468 P16468]
+
** [http://www.uniprot.org/uniprot/P43763 P43763]
−
** [http://www.uniprot.org/uniprot/Q9CGB2 Q9CGB2]
+
** [http://www.uniprot.org/uniprot/P0A7B5 P0A7B5]
−
** [http://www.uniprot.org/uniprot/P26616 P26616]
+
** [http://www.uniprot.org/uniprot/P17856 P17856]
−
** [http://www.uniprot.org/uniprot/Q9JVE6 Q9JVE6]
+
** [http://www.uniprot.org/uniprot/P32264 P32264]
−
** [http://www.uniprot.org/uniprot/P37224 P37224]
+
** [http://www.uniprot.org/uniprot/P73071 P73071]
−
** [http://www.uniprot.org/uniprot/P37225 P37225]
+
** [http://www.uniprot.org/uniprot/O04226 O04226]
−
** [http://www.uniprot.org/uniprot/P37221 P37221]
+
** [http://www.uniprot.org/uniprot/O13810 O13810]
−
** [http://www.uniprot.org/uniprot/Q7M1T9 Q7M1T9]
+
** [http://www.uniprot.org/uniprot/P46546 P46546]
−
** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=malate dehydrogenase, nad-requiring|oxaloacetate decarboxylase|malate dehydrogenase (decarboxylating) (nad+)}}
+
{{#set: common-name=glutamate 5-kinase}}
−
{{#set: ec-number=ec-1.1.1.38|ec-1.1.1.39}}
+
{{#set: ec-number=ec-2.7.2.11}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction GLUTKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • glutamate 5-kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6922, L-Nδ-acetylornithine biosynthesis:
    • 5 reactions found over 7 reactions in the full pathway
  • ARGININE-SYN4-PWY, L-ornithine biosynthesis II:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3341, L-proline biosynthesis III (from L-ornithine):
    • 4 reactions found over 3 reactions in the full pathway
  • PROSYN-PWY, L-proline biosynthesis I (from L-glutamate):
    • 3 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis:
    • 7 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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