Difference between revisions of "GLYCEROL-DEHYDROGENASE-NADP+-RXN"

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(Created page with "Category:reaction == Reaction RXN-13395 == * direction: ** left-to-right * common-name: ** arachidonate 5-lipoxygenase * ec-number: ** [http://enzyme.expasy.org/EC/1.13.11...")
(Created page with "Category:reaction == Reaction PHOSPHORIBULOKINASE-RXN == * direction: ** reversible * common-name: ** phosphoribulokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-13395 ==
+
== Reaction PHOSPHORIBULOKINASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** arachidonate 5-lipoxygenase
+
** phosphoribulokinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.13.11.34 ec-1.13.11.34]
+
** [http://enzyme.expasy.org/EC/2.7.1.19 ec-2.7.1.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ARACHIDONIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-8892]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[D-RIBULOSE-15-P2]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ04903]]
−
* Gene: [[SJ16634]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ03316]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12567]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05858]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16633]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ08276]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ21862]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16632]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05859]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ21859]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ08291]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-392]], lipoxin biosynthesis:
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
−
** '''1''' reactions found over '''11''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt:
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* RHEA:
−
{{#set: common-name=arachidonate 5-lipoxygenase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19368 19368]
−
{{#set: ec-number=ec-1.13.11.34}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=11}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01523 R01523]
−
{{#set: nb pathway associated=1}}
+
* UNIPROT:
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P23010 P23010]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P0AEX5 P0AEX5]
 +
** [http://www.uniprot.org/uniprot/P19923 P19923]
 +
** [http://www.uniprot.org/uniprot/P19924 P19924]
 +
** [http://www.uniprot.org/uniprot/P23015 P23015]
 +
** [http://www.uniprot.org/uniprot/P12033 P12033]
 +
** [http://www.uniprot.org/uniprot/Q8GRU9 Q8GRU9]
 +
** [http://www.uniprot.org/uniprot/P09559 P09559]
 +
** [http://www.uniprot.org/uniprot/P25697 P25697]
 +
** [http://www.uniprot.org/uniprot/P93681 P93681]
 +
** [http://www.uniprot.org/uniprot/P19824 P19824]
 +
** [http://www.uniprot.org/uniprot/P27774 P27774]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=phosphoribulokinase}}
 +
{{#set: ec-number=ec-2.7.1.19}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:17, 14 January 2021

Reaction PHOSPHORIBULOKINASE-RXN

  • direction:
    • reversible
  • common-name:
    • phosphoribulokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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