Difference between revisions of "GLYCINE--TRNA-LIGASE-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-27...")
 
(Created page with "Category:reaction == Reaction GLYCINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** glycine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726] ==
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== Reaction GLYCINE--TRNA-LIGASE-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-2759]
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** left-to-right
 
* common-name:
 
* common-name:
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** (4z,7z,10z,13z,16z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase)
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** glycine-trna ligase
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== Reaction(s) found ==
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* ec-number:
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* [[RXN-16112]]
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** [http://enzyme.expasy.org/EC/6.1.1.14 ec-6.1.1.14]
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* [[RXN-16113]]
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== Reaction formula ==
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* [[RXN-17109]]
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* 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[GLY-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c] '''+''' 1 [[PPI]][c]
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* [[RXN-17110]]
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== Gene(s) associated with this reaction  ==
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* [[RXN-17112]]
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* Gene: [[SJ04580]]
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* [[RXN-17113]]
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** Category: [[annotation]]
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* [[RXN-17114]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-17116]]
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** Category: [[orthology]]
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== Reaction(s) not found ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16081 RXN-16081]
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* Gene: [[SJ16484]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17115 RXN-17115]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16079 RXN-16079]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17111 RXN-17111]
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** Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16114 RXN-16114]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: taxonomic-range=tax-2759}}
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* Gene: [[SJ16976]]
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{{#set: common-name=(4z,7z,10z,13z,16z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase)}}
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** Category: [[annotation]]
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{{#set: nb reaction found=8}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: completion rate=0.62}}
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** Category: [[orthology]]
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{{#set: nb total reaction=13}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s) ==
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* [[TRNA-CHARGING-PWY]], tRNA charging:
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR115938
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16014 16014]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P41250 P41250]
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** [http://www.uniprot.org/uniprot/P54380 P54380]
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** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
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** [http://www.uniprot.org/uniprot/P43822 P43822]
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** [http://www.uniprot.org/uniprot/P54381 P54381]
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** [http://www.uniprot.org/uniprot/O51344 O51344]
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** [http://www.uniprot.org/uniprot/Q46371 Q46371]
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** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
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** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
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** [http://www.uniprot.org/uniprot/P43821 P43821]
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** [http://www.uniprot.org/uniprot/O83678 O83678]
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** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
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** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
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** [http://www.uniprot.org/uniprot/P56454 P56454]
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** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
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** [http://www.uniprot.org/uniprot/Q57681 Q57681]
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** [http://www.uniprot.org/uniprot/P67029 P67029]
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** [http://www.uniprot.org/uniprot/O67081 O67081]
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** [http://www.uniprot.org/uniprot/O67898 O67898]
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** [http://www.uniprot.org/uniprot/O59235 O59235]
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** [http://www.uniprot.org/uniprot/P47493 P47493]
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** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
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** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
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** [http://www.uniprot.org/uniprot/P56453 P56453]
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** [http://www.uniprot.org/uniprot/O27874 O27874]
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** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
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** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
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** [http://www.uniprot.org/uniprot/P38088 P38088]
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** [http://www.uniprot.org/uniprot/Q06817 Q06817]
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** [http://www.uniprot.org/uniprot/Q51114 Q51114]
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** [http://www.uniprot.org/uniprot/P75425 P75425]
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** [http://www.uniprot.org/uniprot/Q55716 Q55716]
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** [http://www.uniprot.org/uniprot/P00960 P00960]
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** [http://www.uniprot.org/uniprot/P00961 P00961]
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** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=glycine-trna ligase}}
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{{#set: ec-number=ec-6.1.1.14}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction GLYCINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • glycine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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