Difference between revisions of "GLYCINE--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-10060 == * direction: ** left-to-right * common-name: ** 3-oxocerotoyl-[acp] reductase ** 3-oxoacyl-[acyl-carrier-protein] reductase (nad...")
(Created page with "Category:reaction == Reaction GLYCINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** glycine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-10060 ==
+
== Reaction GLYCINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxocerotoyl-[acp] reductase
+
** glycine-trna ligase
−
** 3-oxoacyl-[acyl-carrier-protein] reductase (nadph)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
+
** [http://enzyme.expasy.org/EC/6.1.1.14 ec-6.1.1.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-oxo-cerotoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxycerotoyl-ACPs]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[GLY-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17743]]
+
* Gene: [[SJ04580]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ04229]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16484]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13014]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16976]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 23: Line 26:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6113]], superpathway of mycolate biosynthesis:
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''8''' reactions found over '''4''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWYG-321]], mycolate biosynthesis:
 
−
** '''26''' reactions found over '''205''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR116300
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115938
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16014 16014]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P41250 P41250]
 +
** [http://www.uniprot.org/uniprot/P54380 P54380]
 +
** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
 +
** [http://www.uniprot.org/uniprot/P43822 P43822]
 +
** [http://www.uniprot.org/uniprot/P54381 P54381]
 +
** [http://www.uniprot.org/uniprot/O51344 O51344]
 +
** [http://www.uniprot.org/uniprot/Q46371 Q46371]
 +
** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
 +
** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
 +
** [http://www.uniprot.org/uniprot/P43821 P43821]
 +
** [http://www.uniprot.org/uniprot/O83678 O83678]
 +
** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
 +
** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
 +
** [http://www.uniprot.org/uniprot/P56454 P56454]
 +
** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
 +
** [http://www.uniprot.org/uniprot/Q57681 Q57681]
 +
** [http://www.uniprot.org/uniprot/P67029 P67029]
 +
** [http://www.uniprot.org/uniprot/O67081 O67081]
 +
** [http://www.uniprot.org/uniprot/O67898 O67898]
 +
** [http://www.uniprot.org/uniprot/O59235 O59235]
 +
** [http://www.uniprot.org/uniprot/P47493 P47493]
 +
** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
 +
** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
 +
** [http://www.uniprot.org/uniprot/P56453 P56453]
 +
** [http://www.uniprot.org/uniprot/O27874 O27874]
 +
** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
 +
** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
 +
** [http://www.uniprot.org/uniprot/P38088 P38088]
 +
** [http://www.uniprot.org/uniprot/Q06817 Q06817]
 +
** [http://www.uniprot.org/uniprot/Q51114 Q51114]
 +
** [http://www.uniprot.org/uniprot/P75425 P75425]
 +
** [http://www.uniprot.org/uniprot/Q55716 Q55716]
 +
** [http://www.uniprot.org/uniprot/P00960 P00960]
 +
** [http://www.uniprot.org/uniprot/P00961 P00961]
 +
** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxocerotoyl-[acp] reductase|3-oxoacyl-[acyl-carrier-protein] reductase (nadph)}}
+
{{#set: common-name=glycine-trna ligase}}
−
{{#set: ec-number=ec-1.1.1.100}}
+
{{#set: ec-number=ec-6.1.1.14}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction GLYCINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • glycine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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