Difference between revisions of "GLYCINE-AMINOTRANSFERASE-RXN"

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(Created page with "Category:reaction == Reaction METHYLCROTONYL-COA-CARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** 3-methylcrotonyl-coa carboxylase * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction GLYCINE-AMINOTRANSFERASE-RXN == * direction: ** reversible * common-name: ** glycine transaminase * ec-number: ** [http://enzyme.expasy.org/E...")
 
(3 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHYLCROTONYL-COA-CARBOXYLASE-RXN ==
+
== Reaction GLYCINE-AMINOTRANSFERASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 3-methylcrotonyl-coa carboxylase
+
** glycine transaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.4.1.4 ec-6.4.1.4]
+
** [http://enzyme.expasy.org/EC/2.6.1.4 ec-2.6.1.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-METHYL-CROTONYL-COA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[TRANS-3-METHYL-GLUTACONYL-COA]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLY]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[GLYOX]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12008]]
+
* Gene: [[SJ19809]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08104]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19835]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02214]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 28: Line 16:
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LEU-DEG2-PWY]], L-leucine degradation I:
+
* [[PWY-181]], photorespiration:
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR100364
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13590 13590]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14092 14092]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04138 R04138]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00372 R00372]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q40121 Q40121]
+
{{#set: common-name=glycine transaminase}}
−
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
+
{{#set: ec-number=ec-2.6.1.4}}
−
{{#set: direction=left-to-right}}
+
{{#set: nb gene associated=1}}
−
{{#set: common-name=3-methylcrotonyl-coa carboxylase}}
 
−
{{#set: ec-number=ec-6.4.1.4}}
 
−
{{#set: nb gene associated=4}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction GLYCINE-AMINOTRANSFERASE-RXN

  • direction:
    • reversible
  • common-name:
    • glycine transaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-181, photorespiration:
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR100364
  • RHEA:
  • LIGAND-RXN:





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