Difference between revisions of "GLYCINE-AMINOTRANSFERASE-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-1224 tax-12...")
(Created page with "Category:reaction == Reaction IPPISOM-RXN == * direction: ** reversible * common-name: ** isopentenyl diphosphate isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5....")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY] ==
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== Reaction IPPISOM-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-1224 tax-1224]
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** reversible
 
* common-name:
 
* common-name:
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** protocatechuate degradation i (meta-cleavage pathway)
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** isopentenyl diphosphate isomerase
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== Reaction(s) found ==
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* ec-number:
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* [[OXALODECARB-RXN]]
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** [http://enzyme.expasy.org/EC/5.3.3.2 ec-5.3.3.2]
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* [[RXN-2464]]
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== Reaction formula ==
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== Reaction(s) not found ==
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* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=R107-RXN R107-RXN]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PROTOCATECHUATE-45-DIOXYGENASE-RXN PROTOCATECHUATE-45-DIOXYGENASE-RXN]
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* Gene: [[SJ13532]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2462 RXN-2462]
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** Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.45-RXN 1.2.1.45-RXN]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2463 RXN-2463]
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* Gene: [[SJ15203]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9983 RXN-9983]
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** Category: [[annotation]]
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{{#set: taxonomic-range=tax-1224}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: common-name=protocatechuate degradation i (meta-cleavage pathway)}}
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** Category: [[orthology]]
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{{#set: nb reaction found=2}}
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: completion rate=0.25}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb total reaction=8}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s) ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis:
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6174]], mevalonate pathway II (archaea):
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7560]], methylerythritol phosphate pathway II:
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7524]], mevalonate pathway III (archaea):
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** '''5''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7391]], isoprene biosynthesis II (engineered):
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** '''7''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-922]], mevalonate pathway I:
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7102]], bisabolene biosynthesis (engineered):
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6859]], all-trans-farnesol biosynthesis:
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** '''3''' reactions found over '''4''' reactions in the full pathway
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</div>
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23287 23287]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P15496 P15496]
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** [http://www.uniprot.org/uniprot/Q10132 Q10132]
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** [http://www.uniprot.org/uniprot/Q38929 Q38929]
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** [http://www.uniprot.org/uniprot/Q42553 Q42553]
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** [http://www.uniprot.org/uniprot/P93355 P93355]
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** [http://www.uniprot.org/uniprot/O81691 O81691]
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** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
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** [http://www.uniprot.org/uniprot/O81660 O81660]
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** [http://www.uniprot.org/uniprot/O81659 O81659]
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{{#set: direction=reversible}}
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{{#set: common-name=isopentenyl diphosphate isomerase}}
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{{#set: ec-number=ec-5.3.3.2}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=10}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:46, 18 December 2020

Reaction IPPISOM-RXN

  • direction:
    • reversible
  • common-name:
    • isopentenyl diphosphate isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis:
    • 3 reactions found over 3 reactions in the full pathway
  • NONMEVIPP-PWY, methylerythritol phosphate pathway I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-6174, mevalonate pathway II (archaea):
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (archaea):
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered):
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-922, mevalonate pathway I:
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered):
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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