Difference between revisions of "GLYCPDIESTER-RXN"

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(Created page with "Category:reaction == Reaction GLUCONOKIN-RXN == * direction: ** left-to-right * common-name: ** d-gluconate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.12 ec...")
(Created page with "Category:reaction == Reaction GLYCPDIESTER-RXN == * direction: ** left-to-right * common-name: ** glycerophosphoryl diester phosphodiesterase, periplasmic * ec-number: **...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUCONOKIN-RXN ==
+
== Reaction GLYCPDIESTER-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** d-gluconate kinase
+
** glycerophosphoryl diester phosphodiesterase, periplasmic
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.12 ec-2.7.1.12]
+
** [http://enzyme.expasy.org/EC/3.1.4.46 ec-3.1.4.46]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[GLUCONATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-2961]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[Glycerophosphodiesters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14827]]
+
* Gene: [[SJ16458]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00999]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5530]], sorbitol biosynthesis II:
+
* [[PWY-6952]], glycerophosphodiester degradation:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[IDNCAT-PWY]], L-idonate degradation:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[GLUCONSUPER-PWY]], D-gluconate degradation:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR106719
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19434 19434]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12970 12970]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01737 R01737]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00857 R00857]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P12011 P12011]
+
** [http://www.uniprot.org/uniprot/Q99387 Q99387]
−
** [http://www.uniprot.org/uniprot/Q9JRF7 Q9JRF7]
+
** [http://www.uniprot.org/uniprot/P10908 P10908]
−
** [http://www.uniprot.org/uniprot/Q8X6W0 Q8X6W0]
+
** [http://www.uniprot.org/uniprot/Q06282 Q06282]
−
** [http://www.uniprot.org/uniprot/Q9CDN5 Q9CDN5]
+
** [http://www.uniprot.org/uniprot/Q9V208 Q9V208]
−
** [http://www.uniprot.org/uniprot/P39208 P39208]
+
** [http://www.uniprot.org/uniprot/P09394 P09394]
 +
** [http://www.uniprot.org/uniprot/Q9S3K5 Q9S3K5]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=d-gluconate kinase}}
+
{{#set: common-name=glycerophosphoryl diester phosphodiesterase, periplasmic}}
−
{{#set: ec-number=ec-2.7.1.12}}
+
{{#set: ec-number=ec-3.1.4.46}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction GLYCPDIESTER-RXN

  • direction:
    • left-to-right
  • common-name:
    • glycerophosphoryl diester phosphodiesterase, periplasmic
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6952, glycerophosphodiester degradation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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