Difference between revisions of "GLYCPDIESTER-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-304 RXN66-304] == * direction: ** left-to-right * common-name: ** 14-hydroxylanosterol 14-deh...")
(Created page with "Category:reaction == Reaction GLYCPDIESTER-RXN == * direction: ** left-to-right * common-name: ** glycerophosphoryl diester phosphodiesterase, periplasmic * ec-number: **...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-304 RXN66-304] ==
+
== Reaction GLYCPDIESTER-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 14-hydroxylanosterol 14-dehydrogenase
+
** glycerophosphoryl diester phosphodiesterase, periplasmic
−
** 4,4-dimethyl-14α-hydroxymethyl-5α-cholesta-8,24-dien-3β-o,nadph:oxygen oxidoreductasel
+
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.1.4.46 ec-3.1.4.46]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-4568]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-4573]][c] '''+''' 1 [[NADP]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[Glycerophosphodiesters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05072]]
+
* Gene: [[SJ16458]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00999]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-4 PWY66-4]
+
* [[PWY-6952]], glycerophosphodiester degradation:
−
** '''14''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY66-341]], cholesterol biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-341 PWY66-341]
 
−
** '''14''' reactions found over '''18''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR106719
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12970 12970]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00857 R00857]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q99387 Q99387]
 +
** [http://www.uniprot.org/uniprot/P10908 P10908]
 +
** [http://www.uniprot.org/uniprot/Q06282 Q06282]
 +
** [http://www.uniprot.org/uniprot/Q9V208 Q9V208]
 +
** [http://www.uniprot.org/uniprot/P09394 P09394]
 +
** [http://www.uniprot.org/uniprot/Q9S3K5 Q9S3K5]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=4,4-dimethyl-14α-hydroxymethyl-5α-cholesta-8,24-dien-3β-o,nadph:oxygen oxidoreductasel|14-hydroxylanosterol 14-dehydrogenase}}
+
{{#set: common-name=glycerophosphoryl diester phosphodiesterase, periplasmic}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-3.1.4.46}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction GLYCPDIESTER-RXN

  • direction:
    • left-to-right
  • common-name:
    • glycerophosphoryl diester phosphodiesterase, periplasmic
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6952, glycerophosphodiester degradation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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