Difference between revisions of "GLYMALTOPHOSPHORYL-RXN"
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(Created page with "Category:reaction == Reaction 3.1.3.57-RXN == * direction: ** left-to-right * common-name: ** inositol 1,4-bisphosphate 1-phosphatase * ec-number: ** [http://enzyme.expasy...") |
(Created page with "Category:reaction == Reaction 1.1.1.34-RXN == * direction: ** reversible * common-name: ** hydroxymethylglutaryl-coa reductase * ec-number: ** [http://enzyme.expasy.org/EC...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction 1.1.1.34-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** hydroxymethylglutaryl-coa reductase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.1.1.34 ec-1.1.1.34] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CO-A]][c] '''+''' 1 [[MEVALONATE]][c] '''+''' 2 [[NADP]][c] '''<=>''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''+''' 2 [[NADPH]][c] '''+''' 2 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ18779]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ18136]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ05150]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-922]], mevalonate pathway I: |
− | ** ''' | + | ** '''7''' reactions found over '''7''' reactions in the full pathway |
+ | * [[PWY-6174]], mevalonate pathway II (archaea): | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7391]], isoprene biosynthesis II (engineered): | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7524]], mevalonate pathway III (archaea): | ||
+ | ** '''5''' reactions found over '''8''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15992 15992] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R02082 R02082] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P16393 P16393] |
− | {{#set: direction= | + | ** [http://www.uniprot.org/uniprot/P14891 P14891] |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P16237 P16237] |
− | {{#set: ec-number=ec- | + | ** [http://www.uniprot.org/uniprot/P20715 P20715] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/Q59468 Q59468] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/Q01237 Q01237] |
+ | ** [http://www.uniprot.org/uniprot/Q61671 Q61671] | ||
+ | ** [http://www.uniprot.org/uniprot/Q944T9 Q944T9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S9C2 Q9S9C2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S999 Q9S999] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S998 Q9S998] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S997 Q9S997] | ||
+ | ** [http://www.uniprot.org/uniprot/P04035 P04035] | ||
+ | ** [http://www.uniprot.org/uniprot/P00347 P00347] | ||
+ | ** [http://www.uniprot.org/uniprot/P29058 P29058] | ||
+ | ** [http://www.uniprot.org/uniprot/P29057 P29057] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12577 Q12577] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12649 Q12649] | ||
+ | ** [http://www.uniprot.org/uniprot/Q00583 Q00583] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01559 Q01559] | ||
+ | ** [http://www.uniprot.org/uniprot/P48022 P48022] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43825 Q43825] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43826 Q43826] | ||
+ | ** [http://www.uniprot.org/uniprot/P14773 P14773] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M4W2 Q7M4W2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M4W1 Q7M4W1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M4W4 Q7M4W4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M4W3 Q7M4W3] | ||
+ | ** [http://www.uniprot.org/uniprot/P48019 P48019] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41454 Q41454] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42506 Q42506] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41455 Q41455] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41456 Q41456] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41458 Q41458] | ||
+ | ** [http://www.uniprot.org/uniprot/P48020 P48020] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9FS01 Q9FS01] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42466 Q42466] | ||
+ | ** [http://www.uniprot.org/uniprot/O48624 O48624] | ||
+ | ** [http://www.uniprot.org/uniprot/O04188 O04188] | ||
+ | ** [http://www.uniprot.org/uniprot/O24594 O24594] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41438 Q41438] | ||
+ | ** [http://www.uniprot.org/uniprot/O64966 O64966] | ||
+ | ** [http://www.uniprot.org/uniprot/O64967 O64967] | ||
+ | ** [http://www.uniprot.org/uniprot/Q03163 Q03163] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39628 Q39628] | ||
+ | ** [http://www.uniprot.org/uniprot/P93514 P93514] | ||
+ | ** [http://www.uniprot.org/uniprot/O08424 O08424] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=hydroxymethylglutaryl-coa reductase}} | ||
+ | {{#set: ec-number=ec-1.1.1.34}} | ||
+ | {{#set: nb gene associated=3}} | ||
+ | {{#set: nb pathway associated=4}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:34, 5 January 2021
Contents
Reaction 1.1.1.34-RXN
- direction:
- reversible
- common-name:
- hydroxymethylglutaryl-coa reductase
- ec-number:
Reaction formula
- 1 CO-A[c] + 1 MEVALONATE[c] + 2 NADP[c] <=> 1 3-HYDROXY-3-METHYL-GLUTARYL-COA[c] + 2 NADPH[c] + 2 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ18779
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ18136
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ05150
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-922, mevalonate pathway I:
- 7 reactions found over 7 reactions in the full pathway
- PWY-6174, mevalonate pathway II (archaea):
- 6 reactions found over 7 reactions in the full pathway
- PWY-7391, isoprene biosynthesis II (engineered):
- 7 reactions found over 8 reactions in the full pathway
- PWY-7524, mevalonate pathway III (archaea):
- 5 reactions found over 8 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- P16393
- P14891
- P16237
- P20715
- Q59468
- Q01237
- Q61671
- Q944T9
- Q9S9C2
- Q9S999
- Q9S998
- Q9S997
- P04035
- P00347
- P29058
- P29057
- Q12577
- Q12649
- Q00583
- Q01559
- P48022
- Q43825
- Q43826
- P14773
- Q7M4W2
- Q7M4W1
- Q7M4W4
- Q7M4W3
- P48019
- Q41454
- Q42506
- Q41455
- Q41456
- Q41458
- P48020
- Q9FS01
- Q42466
- O48624
- O04188
- O24594
- Q41438
- O64966
- O64967
- Q03163
- Q39628
- P93514
- O08424