Difference between revisions of "GLYOXI-RXN"

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(Created page with "Category:reaction == Reaction RXN-5822 == * direction: ** left-to-right * common-name: ** nadp+ phosphatase ** acid phosphatase ** alkaline phosphatase * ec-number: ** [ht...")
(Created page with "Category:reaction == Reaction RXN-10727 == * direction: ** left-to-right * common-name: ** myristoyl-acp hydrolase activity * ec-number: ** [http://enzyme.expasy.org/EC/3....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-5822 ==
+
== Reaction RXN-10727 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** nadp+ phosphatase
+
** myristoyl-acp hydrolase activity
−
** acid phosphatase
 
−
** alkaline phosphatase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.2 ec-3.1.3.2]
+
** [http://enzyme.expasy.org/EC/3.1.2.14 ec-3.1.2.14]
−
** [http://enzyme.expasy.org/EC/3.1.3.1 ec-3.1.3.1]
+
* synonymous:
 +
** myristoyl-[acyl-carrier protein] hydrolase activity
 +
** tetradecanoyl-acp hydrolase activity
 +
** myristoyl-acp hydrolase activity
 +
** tetradecanoyl-[acyl-carrier-protein] hydrolase activity
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[Myristoyl-ACPs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[CPD-7836]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[SJ13863]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04752]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05429]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09354]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06607]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07345]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12563]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04753]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02191]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17788]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21215]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ01423]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ20261]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13017]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20260]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11088]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ01171]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05430]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ22353]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17787]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[NADPHOS-DEPHOS-PWY]], NAD phosphorylation and dephosphorylation:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5083]], NAD/NADH phosphorylation and dephosphorylation:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[NAD-BIOSYNTHESIS-II]], NAD salvage pathway III (to nicotinamide riboside):
 
−
** '''4''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28051 28051]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30126 30126]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00118 R00118]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08159 R08159]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=nadp+ phosphatase|alkaline phosphatase|acid phosphatase}}
+
{{#set: common-name=myristoyl-acp hydrolase activity}}
−
{{#set: ec-number=ec-3.1.3.1|ec-3.1.3.2}}
+
{{#set: ec-number=ec-3.1.2.14}}
−
{{#set: nb gene associated=20}}
+
{{#set: synonymous=tetradecanoyl-acp hydrolase activity|myristoyl-[acyl-carrier protein] hydrolase activity|myristoyl-acp hydrolase activity|tetradecanoyl-[acyl-carrier-protein] hydrolase activity}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb gene associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction comment=added for gapfilling}}
 +
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 19:01, 14 January 2021

Reaction RXN-10727

  • direction:
    • left-to-right
  • common-name:
    • myristoyl-acp hydrolase activity
  • ec-number:
  • synonymous:
    • myristoyl-[acyl-carrier protein] hydrolase activity
    • tetradecanoyl-acp hydrolase activity
    • myristoyl-acp hydrolase activity
    • tetradecanoyl-[acyl-carrier-protein] hydrolase activity

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links


  • Property "Synonymous" (as page type) with input value "myristoyl-[acyl-carrier protein] hydrolase activity" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "tetradecanoyl-[acyl-carrier-protein] hydrolase activity" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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