Difference between revisions of "GLYOXI-RXN"

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(Created page with "Category:reaction == Reaction RXN-9516 == * direction: ** left-to-right * common-name: ** 3-oxo-hexanoyl-[acyl-carrier protein] synthase ** 3-oxoacyl-[acyl-carrier-protein...")
(Created page with "Category:reaction == Reaction GLYOXI-RXN == * direction: ** reversible * common-name: ** glyoxalase i ** lactoylglutathione lyase * ec-number: ** [http://enzyme.expasy.org...")
 
(5 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9516 ==
+
== Reaction GLYOXI-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 3-oxo-hexanoyl-[acyl-carrier protein] synthase
+
** glyoxalase i
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
+
** lactoylglutathione lyase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/4.4.1.5 ec-4.4.1.5]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Butanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-hexanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[S-LACTOYL-GLUTATHIONE]][c] '''<=>''' 1 [[GLUTATHIONE]][c] '''+''' 1 [[METHYL-GLYOXAL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ00005]]
+
* Gene: [[SJ17178]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15984]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ06617]]
+
* Gene: [[SJ19492]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15983]]
+
* Gene: [[SJ20171]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ11959]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ04443]]
+
* Gene: [[SJ02270]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13886]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
+
* [[PWY-5386]], methylglyoxal degradation I:
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
 
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* METANETX-RXN : MNXR100355
−
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase|3-oxo-hexanoyl-[acyl-carrier protein] synthase}}
+
* RHEA:
−
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19072 19072]
−
{{#set: nb gene associated=7}}
+
* LIGAND-RXN:
−
{{#set: nb pathway associated=2}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02530 R02530]
−
{{#set: reconstruction category=annotation|orthology}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q04760 Q04760]
 +
** [http://www.uniprot.org/uniprot/P0AC81 P0AC81]
 +
** [http://www.uniprot.org/uniprot/P0A0T3 P0A0T3]
 +
** [http://www.uniprot.org/uniprot/P0A0T2 P0A0T2]
 +
** [http://www.uniprot.org/uniprot/P44638 P44638]
 +
** [http://www.uniprot.org/uniprot/P0A1Q2 P0A1Q2]
 +
** [http://www.uniprot.org/uniprot/P46417 P46417]
 +
** [http://www.uniprot.org/uniprot/Q42891 Q42891]
 +
** [http://www.uniprot.org/uniprot/Q55595 Q55595]
 +
** [http://www.uniprot.org/uniprot/Q09751 Q09751]
 +
** [http://www.uniprot.org/uniprot/Q9XGF2 Q9XGF2]
 +
** [http://www.uniprot.org/uniprot/P16635 P16635]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=glyoxalase i|lactoylglutathione lyase}}
 +
{{#set: ec-number=ec-4.4.1.5}}
 +
{{#set: nb gene associated=6}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction GLYOXI-RXN

  • direction:
    • reversible
  • common-name:
    • glyoxalase i
    • lactoylglutathione lyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5386, methylglyoxal degradation I:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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