Difference between revisions of "GPH-RXN"

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(Created page with "Category:reaction == Reaction GLUTRNAREDUCT-RXN == * direction: ** left-to-right * common-name: ** glutamyl-trna reductase * ec-number: ** [http://enzyme.expasy.org/EC/1.2...")
(Created page with "Category:reaction == Reaction GPH-RXN == * direction: ** left-to-right * common-name: ** phosphoglycolate phosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.3.18...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTRNAREDUCT-RXN ==
+
== Reaction GPH-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glutamyl-trna reductase
+
** phosphoglycolate phosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.70 ec-1.2.1.70]
+
** [http://enzyme.expasy.org/EC/3.1.3.18 ec-3.1.3.18]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Charged-GLT-tRNAs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GLT-tRNAs]][c] '''+''' 1 [[GLUTAMATE-1-SEMIALDEHYDE]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[CPD-67]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLYCOLLATE]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03601]]
+
* Gene: [[SJ10617]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04928]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
+
* [[PWY-181]], photorespiration:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR102543
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12346 12346]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14370 14370]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04109 R04109]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P40852 P40852]
 +
** [http://www.uniprot.org/uniprot/P40853 P40853]
 +
** [http://www.uniprot.org/uniprot/P32662 P32662]
 +
** [http://www.uniprot.org/uniprot/P73525 P73525]
 +
** [http://www.uniprot.org/uniprot/O33512 O33512]
 +
** [http://www.uniprot.org/uniprot/Q9S586 Q9S586]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutamyl-trna reductase}}
+
{{#set: common-name=phosphoglycolate phosphatase}}
−
{{#set: ec-number=ec-1.2.1.70}}
+
{{#set: ec-number=ec-3.1.3.18}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction GPH-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphoglycolate phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-181, photorespiration:
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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