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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction MALSYN-RXN == | + | == Reaction GPPS == |
| | * direction: | | * direction: |
| | ** left-to-right | | ** left-to-right |
| | * common-name: | | * common-name: |
| − | ** malate synthase | + | ** geranyl pyrophosphate synthase |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/2.3.3.9 ec-2.3.3.9]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[ACETYL-COA]][c] '''+''' 1 [[GLYOX]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MAL]][c] '''+''' 1 [[PROTON]][c] | + | * 1.0 [[CPD-4211]][c] '''+''' 1.0 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1.0 [[GERANYL-PP]][c] '''+''' 1.0 [[PPI]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ14150]] | + | * Gene: [[SJ10346]] |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| | ** Category: [[orthology]] | | ** Category: [[orthology]] |
| | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
| |
| − | ** '''10''' reactions found over '''11''' reactions in the full pathway
| |
| − | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
| |
| − | ** '''10''' reactions found over '''12''' reactions in the full pathway
| |
| − | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
| |
| − | ** '''6''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-7294]], D-xylose degradation IV:
| |
| − | ** '''1''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY-7295]], L-arabinose degradation IV:
| |
| − | ** '''1''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-7854]], crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered):
| |
| − | ** '''1''' reactions found over '''14''' reactions in the full pathway
| |
| − | * [[PWY-7118]], chitin degradation to ethanol:
| |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II:
| |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18182 18182]
| |
| − | * PIR:
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
| |
| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
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| − | * UNIPROT:
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| − | ** [http://www.uniprot.org/uniprot/P42450 P42450]
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| − | ** [http://www.uniprot.org/uniprot/Q02216 Q02216]
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| − | ** [http://www.uniprot.org/uniprot/P28344 P28344]
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| − | ** [http://www.uniprot.org/uniprot/P28345 P28345]
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| − | ** [http://www.uniprot.org/uniprot/P30952 P30952]
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| − | ** [http://www.uniprot.org/uniprot/Q43827 Q43827]
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| − | ** [http://www.uniprot.org/uniprot/P21826 P21826]
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| − | ** [http://www.uniprot.org/uniprot/P37330 P37330]
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| − | ** [http://www.uniprot.org/uniprot/P17432 P17432]
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| − | ** [http://www.uniprot.org/uniprot/P17815 P17815]
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| − | ** [http://www.uniprot.org/uniprot/P08997 P08997]
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| − | ** [http://www.uniprot.org/uniprot/P21360 P21360]
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| − | ** [http://www.uniprot.org/uniprot/P08216 P08216]
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| − | ** [http://www.uniprot.org/uniprot/P13244 P13244]
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| − | ** [http://www.uniprot.org/uniprot/P49081 P49081]
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| − | ** [http://www.uniprot.org/uniprot/P45458 P45458]
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| − | ** [http://www.uniprot.org/uniprot/O32913 O32913]
| |
| − | </div>
| |
| | {{#set: direction=left-to-right}} | | {{#set: direction=left-to-right}} |
| − | {{#set: common-name=malate synthase}} | + | {{#set: common-name=geranyl pyrophosphate synthase}} |
| − | {{#set: ec-number=ec-2.3.3.9}}
| |
| | {{#set: nb gene associated=1}} | | {{#set: nb gene associated=1}} |
| − | {{#set: nb pathway associated=8}} | + | {{#set: nb pathway associated=0}} |
| − | {{#set: reconstruction category=annotation|orthology}} | + | {{#set: reconstruction category=orthology}} |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | + | {{#set: reconstruction tool=pantograph}} |
| | {{#set: reconstruction comment=n.a}} | | {{#set: reconstruction comment=n.a}} |
| − | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina}} |
