Difference between revisions of "GPPS"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 t...")
(Created page with "Category:reaction == Reaction MALSYN-RXN == * direction: ** left-to-right * common-name: ** malate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.3.9 ec-2.3.3.9...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257] ==
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== Reaction MALSYN-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]
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** left-to-right
 
* common-name:
 
* common-name:
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** superpathway of fermentation (chlamydomonas reinhardtii)
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** malate synthase
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== Reaction(s) found ==
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* ec-number:
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* [[ALCOHOL-DEHYDROG-RXN]]
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** [http://enzyme.expasy.org/EC/2.3.3.9 ec-2.3.3.9]
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* [[DLACTDEHYDROGNAD-RXN]]
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== Reaction formula ==
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* [[HYDROG-RXN]]
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* 1 [[ACETYL-COA]][c] '''+''' 1 [[GLYOX]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MAL]][c] '''+''' 1 [[PROTON]][c]
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* [[PHOSACETYLTRANS-RXN]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) not found ==
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* Gene: [[SJ14150]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVFORMLY-RXN PYRUVFORMLY-RXN]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETALD-DEHYDROG-RXN ACETALD-DEHYDROG-RXN]
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** Category: [[orthology]]
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{{#set: taxonomic-range=tax-33090}}
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=superpathway of fermentation (chlamydomonas reinhardtii)}}
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb reaction found=4}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: completion rate=0.57}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb total reaction=7}}
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== Pathway(s) ==
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7294]], D-xylose degradation IV:
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** '''1''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7295]], L-arabinose degradation IV:
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** '''1''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7854]], crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered):
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** '''1''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-7118]], chitin degradation to ethanol:
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II:
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18182 18182]
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* PIR:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P42450 P42450]
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** [http://www.uniprot.org/uniprot/Q02216 Q02216]
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** [http://www.uniprot.org/uniprot/P28344 P28344]
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** [http://www.uniprot.org/uniprot/P28345 P28345]
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** [http://www.uniprot.org/uniprot/P30952 P30952]
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** [http://www.uniprot.org/uniprot/Q43827 Q43827]
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** [http://www.uniprot.org/uniprot/P21826 P21826]
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** [http://www.uniprot.org/uniprot/P37330 P37330]
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** [http://www.uniprot.org/uniprot/P17432 P17432]
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** [http://www.uniprot.org/uniprot/P17815 P17815]
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** [http://www.uniprot.org/uniprot/P08997 P08997]
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** [http://www.uniprot.org/uniprot/P21360 P21360]
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** [http://www.uniprot.org/uniprot/P08216 P08216]
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** [http://www.uniprot.org/uniprot/P13244 P13244]
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** [http://www.uniprot.org/uniprot/P49081 P49081]
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** [http://www.uniprot.org/uniprot/P45458 P45458]
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** [http://www.uniprot.org/uniprot/O32913 O32913]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=malate synthase}}
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{{#set: ec-number=ec-2.3.3.9}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=8}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:46, 18 December 2020

Reaction MALSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • malate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
    • 10 reactions found over 12 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7294, D-xylose degradation IV:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7295, L-arabinose degradation IV:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7854, crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered):
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol:
    • 5 reactions found over 6 reactions in the full pathway
  • GLYOXDEG-PWY, glycolate and glyoxylate degradation II:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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