Difference between revisions of "GPPSYN-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN] == * direction: ** lef...")
 
(Created page with "Category:reaction == Reaction GPPSYN-RXN == * direction: ** reversible * common-name: ** geranyl diphosphate synthase ** prenyltransferase ** dimethylallyltranstransferase...")
 
(9 intermediate revisions by 5 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN] ==
+
== Reaction GPPSYN-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** geranyl diphosphate synthase
 +
** prenyltransferase
 +
** dimethylallyltranstransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.39 ec-4.1.1.39]
+
** [http://enzyme.expasy.org/EC/2.5.1.1 ec-2.5.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[D-RIBULOSE-15-P2]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[G3P]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[CPD-4211]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[GERANYL-PP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20910]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ20033]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18424]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03479]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02885]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10781]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10418]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00173]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17982]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19255]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09945]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18127]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15410]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01234]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07213]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04802]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18388]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18409]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06255]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ09061]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10333]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10346]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00009]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20712]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13532]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5532]], nucleoside and nucleotide degradation (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5532 PWY-5532]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis:
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-7410]], ipsdienol biosynthesis:
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
* [[PWY-7102]], bisabolene biosynthesis (engineered):
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6859]], all-trans-farnesol biosynthesis:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7736]], stellatic acid biosynthesis:
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5122]], geranyl diphosphate biosynthesis:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7141]], (3S)-linalool biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7659]], viridicatumtoxin biosynthesis:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7709]], (3R)-linalool biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7182]], linalool biosynthesis I:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR97512
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23124 23124]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00024 R00024]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P00875 P00875]
+
** [http://www.uniprot.org/uniprot/P08524 P08524]
−
** [http://www.uniprot.org/uniprot/P56648 P56648]
+
** [http://www.uniprot.org/uniprot/P05369 P05369]
−
** [http://www.uniprot.org/uniprot/Q7M229 Q7M229]
+
** [http://www.uniprot.org/uniprot/P14324 P14324]
−
** [http://www.uniprot.org/uniprot/Q7M1Q6 Q7M1Q6]
+
** [http://www.uniprot.org/uniprot/P46376 P46376]
−
** [http://www.uniprot.org/uniprot/P24672 P24672]
+
** [http://www.uniprot.org/uniprot/Q45220 Q45220]
−
** [http://www.uniprot.org/uniprot/P24673 P24673]
+
** [http://www.uniprot.org/uniprot/P49350 P49350]
−
** [http://www.uniprot.org/uniprot/Q9MVE5 Q9MVE5]
+
** [http://www.uniprot.org/uniprot/Q50891 Q50891]
−
** [http://www.uniprot.org/uniprot/P48713 P48713]
+
** [http://www.uniprot.org/uniprot/P49349 P49349]
−
** [http://www.uniprot.org/uniprot/Q09119 Q09119]
+
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
−
** [http://www.uniprot.org/uniprot/P28896 P28896]
+
** [http://www.uniprot.org/uniprot/P49351 P49351]
−
** [http://www.uniprot.org/uniprot/Q09125 Q09125]
+
** [http://www.uniprot.org/uniprot/P49352 P49352]
−
** [http://www.uniprot.org/uniprot/O28685 O28685]
+
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
−
** [http://www.uniprot.org/uniprot/O28635 O28635]
+
** [http://www.uniprot.org/uniprot/O24241 O24241]
−
** [http://www.uniprot.org/uniprot/Q9UZD7 Q9UZD7]
+
** [http://www.uniprot.org/uniprot/O24242 O24242]
−
** [http://www.uniprot.org/uniprot/P20455 P20455]
+
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
−
** [http://www.uniprot.org/uniprot/O58677 O58677]
+
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
−
** [http://www.uniprot.org/uniprot/O31666 O31666]
+
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
−
** [http://www.uniprot.org/uniprot/Q59102 Q59102]
+
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
−
** [http://www.uniprot.org/uniprot/P42721 P42721]
+
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
−
** [http://www.uniprot.org/uniprot/Q59462 Q59462]
+
** [http://www.uniprot.org/uniprot/P49353 P49353]
−
** [http://www.uniprot.org/uniprot/Q02980 Q02980]
+
** [http://www.uniprot.org/uniprot/O04882 O04882]
−
** [http://www.uniprot.org/uniprot/P27065 P27065]
+
** [http://www.uniprot.org/uniprot/O65004 O65004]
−
** [http://www.uniprot.org/uniprot/P04991 P04991]
 
−
** [http://www.uniprot.org/uniprot/P00879 P00879]
 
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** [http://www.uniprot.org/uniprot/P24395 P24395]
 
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** [http://www.uniprot.org/uniprot/P26963 P26963]
 
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** [http://www.uniprot.org/uniprot/P24671 P24671]
 
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** [http://www.uniprot.org/uniprot/P69570 P69570]
 
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** [http://www.uniprot.org/uniprot/P16031 P16031]
 
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** [http://www.uniprot.org/uniprot/P24624 P24624]
 
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** [http://www.uniprot.org/uniprot/P25458 P25458]
 
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** [http://www.uniprot.org/uniprot/P12466 P12466]
 
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** [http://www.uniprot.org/uniprot/P00877 P00877]
 
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** [http://www.uniprot.org/uniprot/P08211 P08211]
 
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** [http://www.uniprot.org/uniprot/P00873 P00873]
 
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** [http://www.uniprot.org/uniprot/P08475 P08475]
 
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** [http://www.uniprot.org/uniprot/P22849 P22849]
 
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** [http://www.uniprot.org/uniprot/P22859 P22859]
 
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** [http://www.uniprot.org/uniprot/P22860 P22860]
 
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** [http://www.uniprot.org/uniprot/P24312 P24312]
 
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** [http://www.uniprot.org/uniprot/P08474 P08474]
 
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** [http://www.uniprot.org/uniprot/P06292 P06292]
 
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** [http://www.uniprot.org/uniprot/P16306 P16306]
 
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** [http://www.uniprot.org/uniprot/P14961 P14961]
 
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** [http://www.uniprot.org/uniprot/P10795 P10795]
 
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** [http://www.uniprot.org/uniprot/P10796 P10796]
 
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** [http://www.uniprot.org/uniprot/P10797 P10797]
 
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** [http://www.uniprot.org/uniprot/P10798 P10798]
 
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** [http://www.uniprot.org/uniprot/P27568 P27568]
 
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** [http://www.uniprot.org/uniprot/P23652 P23652]
 
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** [http://www.uniprot.org/uniprot/P04992 P04992]
 
−
** [http://www.uniprot.org/uniprot/P04717 P04717]
 
−
** [http://www.uniprot.org/uniprot/P00868 P00868]
 
−
** [http://www.uniprot.org/uniprot/P07689 P07689]
 
−
** [http://www.uniprot.org/uniprot/P00869 P00869]
 
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** [http://www.uniprot.org/uniprot/P26576 P26576]
 
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** [http://www.uniprot.org/uniprot/P26577 P26577]
 
−
** [http://www.uniprot.org/uniprot/P26574 P26574]
 
−
** [http://www.uniprot.org/uniprot/P26575 P26575]
 
−
** [http://www.uniprot.org/uniprot/P10647 P10647]
 
−
** [http://www.uniprot.org/uniprot/P18960 P18960]
 
−
** [http://www.uniprot.org/uniprot/P24683 P24683]
 
−
** [http://www.uniprot.org/uniprot/P23011 P23011]
 
−
** [http://www.uniprot.org/uniprot/P23012 P23012]
 
−
** [http://www.uniprot.org/uniprot/P27997 P27997]
 
−
** [http://www.uniprot.org/uniprot/P27998 P27998]
 
−
** [http://www.uniprot.org/uniprot/P27985 P27985]
 
−
** [http://www.uniprot.org/uniprot/P05346 P05346]
 
−
** [http://www.uniprot.org/uniprot/P08135 P08135]
 
−
** [http://www.uniprot.org/uniprot/P12089 P12089]
 
−
** [http://www.uniprot.org/uniprot/P05347 P05347]
 
−
** [http://www.uniprot.org/uniprot/P18566 P18566]
 
−
** [http://www.uniprot.org/uniprot/P18567 P18567]
 
−
** [http://www.uniprot.org/uniprot/P00870 P00870]
 
−
** [http://www.uniprot.org/uniprot/P00865 P00865]
 
−
** [http://www.uniprot.org/uniprot/P12468 P12468]
 
−
** [http://www.uniprot.org/uniprot/P24676 P24676]
 
−
** [http://www.uniprot.org/uniprot/P24678 P24678]
 
−
** [http://www.uniprot.org/uniprot/P24679 P24679]
 
−
** [http://www.uniprot.org/uniprot/P24675 P24675]
 
−
** [http://www.uniprot.org/uniprot/P24677 P24677]
 
−
** [http://www.uniprot.org/uniprot/P26962 P26962]
 
−
** [http://www.uniprot.org/uniprot/P10053 P10053]
 
−
** [http://www.uniprot.org/uniprot/P05349 P05349]
 
−
** [http://www.uniprot.org/uniprot/P07180 P07180]
 
−
** [http://www.uniprot.org/uniprot/P08706 P08706]
 
−
** [http://www.uniprot.org/uniprot/P07179 P07179]
 
−
** [http://www.uniprot.org/uniprot/P19160 P19160]
 
−
** [http://www.uniprot.org/uniprot/P11383 P11383]
 
−
** [http://www.uniprot.org/uniprot/P07398 P07398]
 
−
** [http://www.uniprot.org/uniprot/P26667 P26667]
 
−
** [http://www.uniprot.org/uniprot/P00880 P00880]
 
−
** [http://www.uniprot.org/uniprot/P04716 P04716]
 
−
** [http://www.uniprot.org/uniprot/P00874 P00874]
 
−
** [http://www.uniprot.org/uniprot/P05348 P05348]
 
−
** [http://www.uniprot.org/uniprot/P14957 P14957]
 
−
** [http://www.uniprot.org/uniprot/P13951 P13951]
 
−
** [http://www.uniprot.org/uniprot/P16129 P16129]
 
−
** [http://www.uniprot.org/uniprot/P16130 P16130]
 
−
** [http://www.uniprot.org/uniprot/P04718 P04718]
 
−
** [http://www.uniprot.org/uniprot/P05699 P05699]
 
−
** [http://www.uniprot.org/uniprot/P17537 P17537]
 
−
** [http://www.uniprot.org/uniprot/P29684 P29684]
 
−
** [http://www.uniprot.org/uniprot/P27569 P27569]
 
−
** [http://www.uniprot.org/uniprot/Q9S932 Q9S932]
 
−
** [http://www.uniprot.org/uniprot/P26985 P26985]
 
−
** [http://www.uniprot.org/uniprot/Q39387 Q39387]
 
−
** [http://www.uniprot.org/uniprot/Q07087 Q07087]
 
−
** [http://www.uniprot.org/uniprot/Q07088 Q07088]
 
−
** [http://www.uniprot.org/uniprot/P30401 P30401]
 
−
** [http://www.uniprot.org/uniprot/P14959 P14959]
 
−
** [http://www.uniprot.org/uniprot/Q43874 Q43874]
 
−
** [http://www.uniprot.org/uniprot/P25413 P25413]
 
−
** [http://www.uniprot.org/uniprot/Q32753 Q32753]
 
−
** [http://www.uniprot.org/uniprot/P32764 P32764]
 
−
** [http://www.uniprot.org/uniprot/P31191 P31191]
 
−
** [http://www.uniprot.org/uniprot/P31192 P31192]
 
−
** [http://www.uniprot.org/uniprot/P31190 P31190]
 
−
** [http://www.uniprot.org/uniprot/P31195 P31195]
 
−
** [http://www.uniprot.org/uniprot/P31194 P31194]
 
−
** [http://www.uniprot.org/uniprot/P31193 P31193]
 
−
** [http://www.uniprot.org/uniprot/P31196 P31196]
 
−
** [http://www.uniprot.org/uniprot/P31197 P31197]
 
−
** [http://www.uniprot.org/uniprot/P31199 P31199]
 
−
** [http://www.uniprot.org/uniprot/P31198 P31198]
 
−
** [http://www.uniprot.org/uniprot/P31200 P31200]
 
−
** [http://www.uniprot.org/uniprot/P31201 P31201]
 
−
** [http://www.uniprot.org/uniprot/P31203 P31203]
 
−
** [http://www.uniprot.org/uniprot/P31180 P31180]
 
−
** [http://www.uniprot.org/uniprot/P31182 P31182]
 
−
** [http://www.uniprot.org/uniprot/P31183 P31183]
 
−
** [http://www.uniprot.org/uniprot/P31181 P31181]
 
−
** [http://www.uniprot.org/uniprot/P31184 P31184]
 
−
** [http://www.uniprot.org/uniprot/P31185 P31185]
 
−
** [http://www.uniprot.org/uniprot/P69567 P69567]
 
−
** [http://www.uniprot.org/uniprot/P69568 P69568]
 
−
** [http://www.uniprot.org/uniprot/P69569 P69569]
 
−
** [http://www.uniprot.org/uniprot/P31186 P31186]
 
−
** [http://www.uniprot.org/uniprot/P31188 P31188]
 
−
** [http://www.uniprot.org/uniprot/P37393 P37393]
 
−
** [http://www.uniprot.org/uniprot/P37394 P37394]
 
−
** [http://www.uniprot.org/uniprot/Q31949 Q31949]
 
−
** [http://www.uniprot.org/uniprot/Q07049 Q07049]
 
−
** [http://www.uniprot.org/uniprot/Q39985 Q39985]
 
−
** [http://www.uniprot.org/uniprot/P34915 P34915]
 
−
** [http://www.uniprot.org/uniprot/Q08186 Q08186]
 
−
** [http://www.uniprot.org/uniprot/Q08184 Q08184]
 
−
** [http://www.uniprot.org/uniprot/Q08183 Q08183]
 
−
** [http://www.uniprot.org/uniprot/Q04450 Q04450]
 
−
** [http://www.uniprot.org/uniprot/Q43746 Q43746]
 
−
** [http://www.uniprot.org/uniprot/P48711 P48711]
 
−
** [http://www.uniprot.org/uniprot/Q31847 Q31847]
 
−
** [http://www.uniprot.org/uniprot/Q32017 Q32017]
 
−
** [http://www.uniprot.org/uniprot/Q32250 Q32250]
 
−
** [http://www.uniprot.org/uniprot/Q32379 Q32379]
 
−
** [http://www.uniprot.org/uniprot/Q32463 Q32463]
 
−
** [http://www.uniprot.org/uniprot/Q32788 Q32788]
 
−
** [http://www.uniprot.org/uniprot/Q32847 Q32847]
 
−
** [http://www.uniprot.org/uniprot/Q32903 Q32903]
 
−
** [http://www.uniprot.org/uniprot/Q33040 Q33040]
 
−
** [http://www.uniprot.org/uniprot/P54205 P54205]
 
−
** [http://www.uniprot.org/uniprot/P54206 P54206]
 
−
** [http://www.uniprot.org/uniprot/P48682 P48682]
 
−
** [http://www.uniprot.org/uniprot/Q31809 Q31809]
 
−
** [http://www.uniprot.org/uniprot/Q31883 Q31883]
 
−
** [http://www.uniprot.org/uniprot/Q31942 Q31942]
 
−
** [http://www.uniprot.org/uniprot/Q31992 Q31992]
 
−
** [http://www.uniprot.org/uniprot/Q32255 Q32255]
 
−
** [http://www.uniprot.org/uniprot/Q32337 Q32337]
 
−
** [http://www.uniprot.org/uniprot/Q32271 Q32271]
 
−
** [http://www.uniprot.org/uniprot/Q32283 Q32283]
 
−
** [http://www.uniprot.org/uniprot/Q32303 Q32303]
 
−
** [http://www.uniprot.org/uniprot/Q32344 Q32344]
 
−
** [http://www.uniprot.org/uniprot/Q32345 Q32345]
 
−
** [http://www.uniprot.org/uniprot/Q32360 Q32360]
 
−
** [http://www.uniprot.org/uniprot/Q32396 Q32396]
 
−
** [http://www.uniprot.org/uniprot/Q32908 Q32908]
 
−
** [http://www.uniprot.org/uniprot/Q33049 Q33049]
 
−
** [http://www.uniprot.org/uniprot/Q33062 Q33062]
 
−
** [http://www.uniprot.org/uniprot/Q33274 Q33274]
 
−
** [http://www.uniprot.org/uniprot/Q33326 Q33326]
 
−
** [http://www.uniprot.org/uniprot/Q33327 Q33327]
 
−
** [http://www.uniprot.org/uniprot/Q33328 Q33328]
 
−
** [http://www.uniprot.org/uniprot/Q33329 Q33329]
 
−
** [http://www.uniprot.org/uniprot/Q33334 Q33334]
 
−
** [http://www.uniprot.org/uniprot/Q33335 Q33335]
 
−
** [http://www.uniprot.org/uniprot/Q33337 Q33337]
 
−
** [http://www.uniprot.org/uniprot/Q33340 Q33340]
 
−
** [http://www.uniprot.org/uniprot/Q33341 Q33341]
 
−
** [http://www.uniprot.org/uniprot/Q33342 Q33342]
 
−
** [http://www.uniprot.org/uniprot/Q33343 Q33343]
 
−
** [http://www.uniprot.org/uniprot/Q33344 Q33344]
 
−
** [http://www.uniprot.org/uniprot/Q33348 Q33348]
 
−
** [http://www.uniprot.org/uniprot/Q33349 Q33349]
 
−
** [http://www.uniprot.org/uniprot/Q33359 Q33359]
 
−
** [http://www.uniprot.org/uniprot/Q33361 Q33361]
 
−
** [http://www.uniprot.org/uniprot/Q33362 Q33362]
 
−
** [http://www.uniprot.org/uniprot/Q33345 Q33345]
 
−
** [http://www.uniprot.org/uniprot/Q33346 Q33346]
 
−
** [http://www.uniprot.org/uniprot/Q33347 Q33347]
 
−
** [http://www.uniprot.org/uniprot/Q36352 Q36352]
 
−
** [http://www.uniprot.org/uniprot/P16881 P16881]
 
−
** [http://www.uniprot.org/uniprot/Q42516 Q42516]
 
−
** [http://www.uniprot.org/uniprot/P48069 P48069]
 
−
** [http://www.uniprot.org/uniprot/P48070 P48070]
 
−
** [http://www.uniprot.org/uniprot/P48072 P48072]
 
−
** [http://www.uniprot.org/uniprot/P48073 P48073]
 
−
** [http://www.uniprot.org/uniprot/P48074 P48074]
 
−
** [http://www.uniprot.org/uniprot/P48075 P48075]
 
−
** [http://www.uniprot.org/uniprot/Q7M2E2 Q7M2E2]
 
−
** [http://www.uniprot.org/uniprot/Q31795 Q31795]
 
−
** [http://www.uniprot.org/uniprot/P28399 P28399]
 
−
** [http://www.uniprot.org/uniprot/Q37700 Q37700]
 
−
** [http://www.uniprot.org/uniprot/P51226 P51226]
 
−
** [http://www.uniprot.org/uniprot/Q43832 Q43832]
 
−
** [http://www.uniprot.org/uniprot/P49521 P49521]
 
−
** [http://www.uniprot.org/uniprot/P49520 P49520]
 
−
** [http://www.uniprot.org/uniprot/O22487 O22487]
 
−
** [http://www.uniprot.org/uniprot/Q37247 Q37247]
 
−
** [http://www.uniprot.org/uniprot/Q41580 Q41580]
 
−
** [http://www.uniprot.org/uniprot/P18062 P18062]
 
−
** [http://www.uniprot.org/uniprot/P41621 P41621]
 
−
** [http://www.uniprot.org/uniprot/O65194 O65194]
 
−
** [http://www.uniprot.org/uniprot/P50922 P50922]
 
−
** [http://www.uniprot.org/uniprot/Q41406 Q41406]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: ec-number=ec-4.1.1.39}}
+
{{#set: common-name=geranyl diphosphate synthase|dimethylallyltranstransferase|prenyltransferase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-2.5.1.1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb gene associated=24}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=11}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction GPPSYN-RXN

  • direction:
    • reversible
  • common-name:
    • geranyl diphosphate synthase
    • prenyltransferase
    • dimethylallyltranstransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7410, ipsdienol biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered):
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7736, stellatic acid biosynthesis:
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5122, geranyl diphosphate biosynthesis:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7141, (3S)-linalool biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7659, viridicatumtoxin biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7709, (3R)-linalool biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7182, linalool biosynthesis I:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=GPPSYN-RXN&oldid=141504"