Difference between revisions of "GTHP"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.101-RXN 2.4.1.101-RXN] == * direction: ** left-to-right * common-name: ** alpha-1,3-mannosyl-...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9557 RXN-9557] == * direction: ** left-to-right * common-name: ** 3-hydroxy-cis-vaccenoyl-[acyl...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.101-RXN 2.4.1.101-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9557 RXN-9557] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** alpha-1,3-mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase
+
** 3-hydroxy-cis-vaccenoyl-[acyl-carrier protein] dehydratase
 +
** 3-hydroxy cis vaccenoyl-[acp] dehydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.1.101 ec-2.4.1.101]
+
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Mannosyl5-N-Glycans]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[Mannosyl5-N-acetyl-glucosamine2-R]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
+
* 1 [[R-3-hydroxy-cis-vaccenoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[cis-vaccen-2-enoyl-ACPs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19827]]
+
* Gene: [[SJ10275]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05137]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7426]], complex N-linked glycan biosynthesis (vertebrates): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7426 PWY-7426]
+
* [[PWY-5973]], cis-vaccenate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5973 PWY-5973]
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7920]], complex N-linked glycan biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7920 PWY-7920]
 
−
** '''2''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11457 11457]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P27115 P27115]
 
−
** [http://www.uniprot.org/uniprot/P27808 P27808]
 
−
** [http://www.uniprot.org/uniprot/Q09325 Q09325]
 
−
** [http://www.uniprot.org/uniprot/Q9XGM8 Q9XGM8]
 
−
** [http://www.uniprot.org/uniprot/Q21450 Q21450]
 
−
** [http://www.uniprot.org/uniprot/Q11068 Q11068]
 
−
** [http://www.uniprot.org/uniprot/Q9GPA3 Q9GPA3]
 
−
** [http://www.uniprot.org/uniprot/P26572 P26572]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=alpha-1,3-mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase}}
+
{{#set: common-name=3-hydroxy-cis-vaccenoyl-[acyl-carrier protein] dehydratase|3-hydroxy cis vaccenoyl-[acp] dehydratase}}
−
{{#set: ec-number=ec-2.4.1.101}}
+
{{#set: ec-number=ec-4.2.1.59}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:28, 26 August 2019

Reaction RXN-9557

  • direction:
    • left-to-right
  • common-name:
    • 3-hydroxy-cis-vaccenoyl-[acyl-carrier protein] dehydratase
    • 3-hydroxy cis vaccenoyl-[acp] dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5973, cis-vaccenate biosynthesis: PWY-5973
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • Property "Common-name" (as page type) with input value "3-hydroxy-cis-vaccenoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "3-hydroxy cis vaccenoyl-[acp] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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