Difference between revisions of "Gap-filling"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10658 RXN-10658] == * direction: ** left-to-right * common-name: ** 3-oxoacyl-[acyl-carrier-pro...")
(Created page with "{{#ask: Category:reaction reconstruction category::gap-filling | ?common-name | ?ec-number | ?reconstruction tool | ?reconstruction source | ?reconstruction comment |...")
 
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[[Category:reaction]]
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{{#ask: [[Category:reaction]] [[reconstruction category::gap-filling]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10658 RXN-10658] ==
+
| ?common-name
* direction:
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| ?ec-number
** left-to-right
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| ?reconstruction tool
* common-name:
+
| ?reconstruction source
** 3-oxoacyl-[acyl-carrier-protein] synthase
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| ?reconstruction comment
* ec-number:
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| ?nb gene associated
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
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| ?nb pathway associated
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
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}}
== Reaction formula ==
 
* 1 [[Cis-Delta7-tetradecenoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-cis-D9-hexadecenoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* Gene: [[SJ15983]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ10624]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ04443]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ18059]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ15984]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ06617]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ00005]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
== Pathway(s)  ==
 
* [[PWY-6282]], palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6282 PWY-6282]
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase}}
 
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
 
{{#set: nb gene associated=7}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Latest revision as of 11:18, 18 March 2021

 Common-nameEc-numberReconstruction toolReconstruction sourceReconstruction commentNb gene associatedNb pathway associated
1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
1.5.99.12-RXNEc-1.5.99.12MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
2-ACYLGLYCEROL-O-ACYLTRANSFERASE-RXN-CPD66-43/STEAROYL-COA//CPD-17271/CO-A.38.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
2.1.1.143-RXNEc-2.1.1.143MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
3.1.2.19-RXN-CPD-196/WATER//CPD-195/CO-A/PROTON.35.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
3.1.2.19-RXN-HEXANOYL-COA/WATER//HEXANOATE/CO-A/PROTON.42.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
3.1.4.14-RXNEc-3.1.4.14MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
ACECOATRANS-RXN-CPD-10280/ACET//TETRACOSANOATE/ACETYL-COA.42.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
ACECOATRANS-RXN-CPD-196/ACET//CPD-195/ACETYL-COA.33.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
ACECOATRANS-RXN-HEXANOYL-COA/ACET//HEXANOATE/ACETYL-COA.40.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
ACETOLACTSYN-RXNEc-2.2.1.6MenecoGapfilling solution with meneco draft mediumAdded for gapfilling05
ADENYLYLSULFATE-REDUCTASE-RXNEc-1.8.99.2MenecoGapfilling solution with meneco draft mediumAdded for gapfilling04
ALGINATE-SYNTHASE-RXNEc-2.4.1.33MenecoGapfilling solution with meneco draft mediumAdded for gapfilling02
CYSPH-RXNEc-2.5.1MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
CYSTATHIONASE-RXNMenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
DIAMINOPIMEPIM-RXNEc-5.1.1.7MenecoGapfilling solution with meneco draft mediumAdded for gapfilling03
FATTY-ACID-PEROXIDASE-RXNEc-1.11.1.3MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
FESO3OXI-RXNMenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
GLUCISOM-RXNGlucose isomeraseEc-5.3.1.5MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
GLUCISOM-RXN-ALPHA-GLUCOSE//CPD-15382.25.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
GLUCISOM-RXN-GLC//CPD-15382.15.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
HISTIDPHOS-RXNEc-3.1.3.15MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
HOMOSERINE-O-ACETYLTRANSFERASE-RXNEc-2.3.1.31MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
HOMSUCTRAN-RXNEc-2.3.1.46MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
LINOLEOYL-RXNEc-3.1.2MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
MANNITOL-1-PHOSPHATASE-RXNEc-3.1.3.22MenecoGapfilling solution with meneco draft mediumAdded for gapfilling02
MANNPISOM-RXN-MANNOSE-6P//FRUCTOSE-6P.24.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
PHOSMANMUT-RXN-MANNOSE-1P//MANNOSE-6P.23.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
PHOSPHATIDATE-PHOSPHATASE-RXN-CPD0-1422/WATER//CPD66-34/Pi.29.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-10662Ec-3.1.2MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-10727Myristoyl-acp hydrolase activityEc-3.1.2.14MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-11797(r)-3-hydroxydecanoyl-coa synthaseEc-2.4.1MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-11820-STEARIC ACID/HYDROGEN-PEROXIDE//R-2-HYDROXYSTEARATE/WATER.58.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-11976Torulene synthaseEc-2.5.1MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-12559Trans-2-hexenoyl-coa reductase (nad+)Ec-1.3.1.44MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-12777Ec-2.3.1MenecoGapfilling solution with meneco draft mediumAdded for gapfilling02
RXN-12971Ec-1.3.1.93MenecoGapfilling solution with meneco draft mediumAdded for gapfilling02
RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13307Ec-1.3.1.93MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-13308Ec-1.3.1.93MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-137094-methylsterol monooxygenaseEc-1.14.18.9Meneco
Curation
Gapfilling solution with meneco draft medium
Reactions add sjap
Added for gapfilling
Curation sterols (girard et al.)
00
RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4702/NAD/WATER.76.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4702/NADP/WATER.78.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712Ec-1.14.18.9MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4577/NAD/WATER.79.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4577/NADP/WATER.81.MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14037MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14246MenecoGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14275Ec-1.1.1.m19MenecoGapfilling solution with meneco draft mediumAdded for gapfilling01
... further results