Difference between revisions of "GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein"

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(Created page with "Category:gene == Gene SJ03681 == * transcription-direction: ** positive * right-end-position: ** 76441 * left-end-position: ** 49535 * centisome-position: ** 41.899986...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-949 RXN0-949] == * direction: ** left-to-right * common-name: ** lipoyl synthase * ec-number:...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ03681 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-949 RXN0-949] ==
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* transcription-direction:
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* direction:
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** positive
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** left-to-right
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* right-end-position:
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* common-name:
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** 76441
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** lipoyl synthase
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* left-end-position:
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* ec-number:
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** 49535
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** [http://enzyme.expasy.org/EC/2.8.1.8 ec-2.8.1.8]
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* centisome-position:
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== Reaction formula ==
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** 41.899986   
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* 1 [[Octanoylated-domains]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 2 [[Sulfurated-Sulfur-Acceptors]][c] '''=>''' 2 [[CH33ADO]][c] '''+''' 1 [[Lipoyl-Protein-N6-lipoyllysine]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[Unsulfurated-Sulfur-Acceptors]][c]
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== Organism(s) associated with this gene  ==
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== Gene(s) associated with this reaction  ==
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* [[S.japonica_carotenoid_curated]]
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* Gene: [[SJ03663]]
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== Reaction(s) associated ==
 
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* [[ATPASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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* Gene: [[SJ04393]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-11135]]
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* Gene: [[SJ11692]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-12195]]
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== Pathway(s) ==
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** Category: [[annotation]]
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* [[PWY0-1275]], lipoate biosynthesis and incorporation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1275 PWY0-1275]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[RXN-12196]]
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* [[PWY0-501]], lipoate biosynthesis and incorporation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-501 PWY0-501]
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** Category: [[annotation]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6987]], lipoate biosynthesis and incorporation III (Bacillus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6987 PWY-6987]
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* [[RXN0-5462]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** Category: [[annotation]]
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== Reconstruction information  ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) associated ==
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== External links  ==
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* [[PWY-7210]]
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* RHEA:
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** '''8''' reactions found over '''8''' reactions in the full pathway
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16586 16586]
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* [[PWY-7198]]
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* LIGAND-RXN:
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** '''6''' reactions found over '''7''' reactions in the full pathway
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** [http://www.genome.jp/dbget-bin/www_bget?R07767 R07767]
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* [[PWY-7184]]
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{{#set: direction=left-to-right}}
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** '''9''' reactions found over '''9''' reactions in the full pathway
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{{#set: common-name=lipoyl synthase}}
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* [[PWY-6545]]
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{{#set: ec-number=ec-2.8.1.8}}
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: nb gene associated=3}}
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{{#set: transcription-direction=positive}}
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{{#set: nb pathway associated=3}}
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{{#set: right-end-position=76441}}
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{{#set: reconstruction category=annotation}}
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{{#set: left-end-position=49535}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: centisome-position=41.899986    }}
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{{#set: reconstruction comment=n.a}}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: reconstruction source=saccharina_japonica_genome}}
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{{#set: nb reaction associated=6}}
 
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{{#set: nb pathway associated=4}}
 

Revision as of 09:28, 27 August 2019

Reaction RXN0-949

  • direction:
    • left-to-right
  • common-name:
    • lipoyl synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1275, lipoate biosynthesis and incorporation II: PWY0-1275
    • 2 reactions found over 2 reactions in the full pathway
  • PWY0-501, lipoate biosynthesis and incorporation I: PWY0-501
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6987, lipoate biosynthesis and incorporation III (Bacillus): PWY-6987
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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