Difference between revisions of "GlcNAc-GlcA-Gal-Gal-Xyl-Protein"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] == * direction: ** left-to-right * common-name: ** 2c-methyl-d-erythritol 2,4-cy...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CITSYN-RXN CITSYN-RXN] == * direction: ** left-to-right * common-name: ** citrate synthase * ec-num...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CITSYN-RXN CITSYN-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
+
** citrate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.6.1.12 ec-4.6.1.12]
+
** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16]
 +
** [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1]
 +
* synonymous:
 +
** citrate synthesis
 +
** condensing enzyme
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[CMP]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CIT]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21110]]
+
* Gene: [[SJ02212]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
−
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VIII (Helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5750]], itaconate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23865 23865]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16846 16846]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00351 R00351]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43936 A43936]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81200 A81200]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81139 B81139]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64760 E64760]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86708 F86708]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69600 G69600]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81265 G81265]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39506 I39506]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40044 I40044]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40380 I40380]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40717 I40717]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JQ1392 JQ1392]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PQ0046 PQ0046]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41527 S41527]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41563 S41563]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S42370 S42370]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44316 S44316]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52814 S52814]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02390 T02390]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09334 T09334]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44615 T44615]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBY YKBY]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBYC YKBYC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKEC YKEC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMUM YKMUM]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMY YKMY]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPG YKPG]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPSCA YKPSCA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKQPC YKQPC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKRECP YKRECP]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKYT YKYT]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JRA5 Q9JRA5]
 +
** [http://www.uniprot.org/uniprot/Q9JQX0 Q9JQX0]
 +
** [http://www.uniprot.org/uniprot/P31660 P31660]
 +
** [http://www.uniprot.org/uniprot/Q9CHQ6 Q9CHQ6]
 +
** [http://www.uniprot.org/uniprot/P39120 P39120]
 +
** [http://www.uniprot.org/uniprot/Q9PLZ5 Q9PLZ5]
 +
** [http://www.uniprot.org/uniprot/P20902 P20902]
 +
** [http://www.uniprot.org/uniprot/P51033 P51033]
 +
** [http://www.uniprot.org/uniprot/P39119 P39119]
 +
** [http://www.uniprot.org/uniprot/P42457 P42457]
 +
** [http://www.uniprot.org/uniprot/P18789 P18789]
 +
** [http://www.uniprot.org/uniprot/P20903 P20903]
 +
** [http://www.uniprot.org/uniprot/P51038 P51038]
 +
** [http://www.uniprot.org/uniprot/P34085 P34085]
 +
** [http://www.uniprot.org/uniprot/P34575 P34575]
 +
** [http://www.uniprot.org/uniprot/Q43175 Q43175]
 +
** [http://www.uniprot.org/uniprot/P43635 P43635]
 +
** [http://www.uniprot.org/uniprot/O24259 O24259]
 +
** [http://www.uniprot.org/uniprot/O32705 O32705]
 +
** [http://www.uniprot.org/uniprot/P00890 P00890]
 +
** [http://www.uniprot.org/uniprot/P08679 P08679]
 +
** [http://www.uniprot.org/uniprot/P0ABH7 P0ABH7]
 +
** [http://www.uniprot.org/uniprot/Q47237 Q47237]
 +
** [http://www.uniprot.org/uniprot/P20115 P20115]
 +
** [http://www.uniprot.org/uniprot/P26491 P26491]
 +
** [http://www.uniprot.org/uniprot/P00889 P00889]
 +
** [http://www.uniprot.org/uniprot/P20901 P20901]
 +
** [http://www.uniprot.org/uniprot/P09948 P09948]
 +
** [http://www.uniprot.org/uniprot/P21553 P21553]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase}}
+
{{#set: common-name=citrate synthase}}
−
{{#set: ec-number=ec-4.6.1.12}}
+
{{#set: ec-number=ec-2.3.3.16|ec-2.3.3.1}}
 +
{{#set: synonymous=citrate synthesis|condensing enzyme}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=14}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction CITSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • citrate synthase
  • ec-number:
  • synonymous:
    • citrate synthesis
    • condensing enzyme

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (Helicobacter): REDCITCYC
    • 5 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 19 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5750, itaconate biosynthesis I: PWY-5750
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=GlcNAc-GlcA-Gal-Gal-Xyl-Protein&oldid=35266"