Difference between revisions of "Guanine34-in-tRNAs"

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(Created page with "Category:gene == Gene SJ02437 == * transcription-direction: ** negative * right-end-position: ** 37512 * left-end-position: ** 24860 * centisome-position: ** 18.33117...")
(Created page with "Category:gene == Gene SJ04922 == * transcription-direction: ** positive * right-end-position: ** 79777 * left-end-position: ** 51287 * centisome-position: ** 52.31926...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ02437 ==
+
== Gene SJ04922 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 37512
+
** 79777
 
* left-end-position:
 
* left-end-position:
−
** 24860
+
** 51287
 
* centisome-position:
 
* centisome-position:
−
** 18.33117    
+
** 52.31926    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[GLUTATHIONE-PEROXIDASE-RXN]]
+
* [[GLUTAMATE-SYNTHASE-FERREDOXIN-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[GSHTRAN-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[GST-RXN]]
+
* [[GLUTAMATE-SYNTHASE-NADH-RXN]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[GLUTAMATESYN-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* [[PEROXID-RXN]]
+
* [[GLUTAMIN-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[PROSTAGLANDIN-D-SYNTHASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13673]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14240]]
+
* [[RXN-12878]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-15288]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-15680]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-17352]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-8635]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6549]]
−
* [[DETOX1-PWY-1]]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-4341]]
−
* [[PWY-4081]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-6964]]
−
* [[PWY-6842]]
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-6963]]
−
* [[PWY-4061]]
+
** '''4''' reactions found over '''2''' reactions in the full pathway
−
** '''4''' reactions found over '''8''' reactions in the full pathway
+
* [[GLUGLNSYN-PWY]]
−
* [[PWY66-374]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
* [[GLUTSYN-PWY]]
−
* [[PWY-7112]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
* [[GLUTAMINEFUM-PWY]]
−
* [[PWY-7214]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
* [[CITRULBIO-PWY]]
−
* [[PWY-7445]]
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
* [[GLUTAMINDEG-PWY]]
−
* [[PWY-7533]]
 
−
** '''3''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5466]]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6824]]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5469]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5461]]
 
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
−
</div>
+
{{#set: transcription-direction=positive}}
−
{{#set: transcription-direction=negative}}
+
{{#set: right-end-position=79777}}
−
{{#set: right-end-position=37512}}
+
{{#set: left-end-position=51287}}
−
{{#set: left-end-position=24860}}
+
{{#set: centisome-position=52.31926   }}
−
{{#set: centisome-position=18.33117   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=11}}
+
{{#set: nb reaction associated=5}}
−
{{#set: nb pathway associated=13}}
+
{{#set: nb pathway associated=9}}

Revision as of 09:28, 27 August 2019

Gene SJ04922

  • transcription-direction:
    • positive
  • right-end-position:
    • 79777
  • left-end-position:
    • 51287
  • centisome-position:
    • 52.31926

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-4341
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6964
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6963
    • 4 reactions found over 2 reactions in the full pathway
  • GLUGLNSYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTSYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTAMINEFUM-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway
  • GLUTAMINDEG-PWY
    • 1 reactions found over 1 reactions in the full pathway




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