Difference between revisions of "H2Oth"
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(Created page with "Category:reaction == Reaction PNP-RXN == * direction: ** reversible * common-name: ** purine nucleoside phosphorylase * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.1...") |
(Created page with "Category:reaction == Reaction TRNA-URACIL-5--METHYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** trna(m5u54)methyltransferase * ec-number: ** [http://...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction TRNA-URACIL-5--METHYLTRANSFERASE-RXN == |
* direction: | * direction: | ||
| − | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
| − | ** | + | ** trna(m5u54)methyltransferase |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.1.1.35 ec-2.1.1.35] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Uracil-54-in-tRNA]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[tRNA-containing-5Me-uridine54]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ03220]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * METANETX-RXN : MNXR124073 | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42713 42713] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00594 R00594] |
* UNIPROT: | * UNIPROT: | ||
| − | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P23003 P23003] |
| − | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P31812 P31812] |
| − | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9PP92 Q9PP92] |
| − | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9JT82 Q9JT82] |
| − | + | {{#set: direction=left-to-right}} | |
| − | + | {{#set: common-name=trna(m5u54)methyltransferase}} | |
| − | + | {{#set: ec-number=ec-2.1.1.35}} | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | {{#set: direction= | ||
| − | {{#set: common-name= | ||
| − | {{#set: ec-number=ec-2. | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
{{#set: nb pathway associated=0}} | {{#set: nb pathway associated=0}} | ||
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:35, 15 March 2021
Contents
Reaction TRNA-URACIL-5--METHYLTRANSFERASE-RXN
- direction:
- left-to-right
- common-name:
- trna(m5u54)methyltransferase
- ec-number:
Reaction formula
- 1 S-ADENOSYLMETHIONINE[c] + 1 Uracil-54-in-tRNA[c] => 1 ADENOSYL-HOMO-CYS[c] + 1 PROTON[c] + 1 tRNA-containing-5Me-uridine54[c]
Gene(s) associated with this reaction
- Gene: SJ03220
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
