Difference between revisions of "H2Otm"

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(Created page with "Category:reaction == Reaction 2OXOGLUTDECARB-RXN == * direction: ** left-to-right * common-name: ** 2-oxoglutarate decarboxylase * ec-number: ** [http://enzyme.expasy.org/...")
(Created page with "Category:reaction == Reaction RXN0-6377 == * direction: ** left-to-right * common-name: ** nitrite reductase [nad(p)h] * ec-number: ** [http://enzyme.expasy.org/EC/1.7.1.4...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2OXOGLUTDECARB-RXN ==
+
== Reaction RXN0-6377 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2-oxoglutarate decarboxylase
+
** nitrite reductase [nad(p)h]
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.4.2 ec-1.2.4.2]
+
** [http://enzyme.expasy.org/EC/1.7.1.4 ec-1.7.1.4]
−
* synonymous:
 
−
** oxoglutarate decarboxylase
 
−
** 2-oxoglutarate decarboxylation
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c]
+
* 3 [[NADH-P-OR-NOP]][c] '''+''' 1 [[NITRITE]][c] '''+''' 5 [[PROTON]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 3 [[NAD-P-OR-NOP]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21701]]
+
* Gene: [[SJ21568]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ11978]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
* Gene: [[SJ13629]]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06474]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-398]], TCA cycle III (animals):
+
* [[PWY-723]], alkylnitronates degradation:
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA:
+
* [[PWY-5675]], nitrate reduction V (assimilatory):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12189 12189]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P23129 P23129]
 
−
** [http://www.uniprot.org/uniprot/Q02218 Q02218]
 
−
** [http://www.uniprot.org/uniprot/Q60597 Q60597]
 
−
** [http://www.uniprot.org/uniprot/Q9JRJ8 Q9JRJ8]
 
−
** [http://www.uniprot.org/uniprot/P20967 P20967]
 
−
** [http://www.uniprot.org/uniprot/P0AFG3 P0AFG3]
 
−
** [http://www.uniprot.org/uniprot/P20707 P20707]
 
−
** [http://www.uniprot.org/uniprot/P51056 P51056]
 
−
** [http://www.uniprot.org/uniprot/Q56600 Q56600]
 
−
** [http://www.uniprot.org/uniprot/O49541 O49541]
 
−
** [http://www.uniprot.org/uniprot/Q59106 Q59106]
 
−
** [http://www.uniprot.org/uniprot/Q9M2T8 Q9M2T8]
 
−
** [http://www.uniprot.org/uniprot/Q9ZRQ2 Q9ZRQ2]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2-oxoglutarate decarboxylase}}
+
{{#set: common-name=nitrite reductase [nad(p)h]}}
−
{{#set: ec-number=ec-1.2.4.2}}
+
{{#set: ec-number=ec-1.7.1.4}}
−
{{#set: synonymous=2-oxoglutarate decarboxylation|oxoglutarate decarboxylase}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=3}}
 
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:16, 14 January 2021

Reaction RXN0-6377

  • direction:
    • left-to-right
  • common-name:
    • nitrite reductase [nad(p)h]
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-723, alkylnitronates degradation:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5675, nitrate reduction V (assimilatory):
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "nitrite reductase [nad(p)h" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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