Difference between revisions of "H2PTEROATESYNTH-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] == * direction: ** left-to-right * common-name: ** agmatinase * ec-number:...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R05819 R05819] == * direction: ** reversible * common-name: ** phycoerythrobilin:ferredoxin oxidore...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R05819 R05819] ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
** agmatinase
+
** phycoerythrobilin:ferredoxin oxidoreductase
* ec-number:
 
** [http://enzyme.expasy.org/EC/3.5.3.11 ec-3.5.3.11]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
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* 1.0 [[1516-DIHYDROBILIVERDIN]][h] '''+''' 1.0 [[Reduced-ferredoxins]][h] '''<=>''' 1.0 [[3Z-PHYCOERYTHROBILIN]][h] '''+''' 1.0 [[Oxidized-ferredoxins]][h]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ00773]]
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* Gene: [[SJ04581]]
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-823 PWY0-823]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
* [[PWY-40]], putrescine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-40 PWY-40]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: direction=reversible}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
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{{#set: common-name=phycoerythrobilin:ferredoxin oxidoreductase}}
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P60654 P60654]
 
** [http://www.uniprot.org/uniprot/P60653 P60653]
 
** [http://www.uniprot.org/uniprot/P60651 P60651]
 
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
 
** [http://www.uniprot.org/uniprot/P73270 P73270]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=agmatinase}}
 
{{#set: ec-number=ec-3.5.3.11}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=3}}
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{{#set: nb pathway associated=0}}
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction category=orthology}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 14:28, 26 August 2019

Reaction R05819

  • direction:
    • reversible
  • common-name:
    • phycoerythrobilin:ferredoxin oxidoreductase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links