Difference between revisions of "HACD2h"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERRIC-CHELATE-REDUCTASE-RXN FERRIC-CHELATE-REDUCTASE-RXN] == * direction: ** left-to-right * commo...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3521 RXN-3521] == * direction: ** left-to-right * common-name: ** l-ascorbate peroxidase * syno...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERRIC-CHELATE-REDUCTASE-RXN FERRIC-CHELATE-REDUCTASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3521 RXN-3521] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** ferric-chelate reductase (nadh)
+
** l-ascorbate peroxidase
−
** ferric-chelate reductase
+
* synonymous:
−
* ec-number:
+
** ascorbic acid peroxidase
−
** [http://enzyme.expasy.org/EC/1.16.1.7 ec-1.16.1.7]
+
** l-ascorbic acid peroxidase
 +
** l-ascorbic acid-specific peroxidase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[Fe3-siderophores]][c] '''+''' 1 [[NADH]][c] '''=>''' 2 [[Fe2-siderophores]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PROTON]][c]
+
* 2 [[ASCORBATE]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[CPD-318]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ04585]]
−
* Gene: [[SJ07591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ22411]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ22407]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ22408]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ08829]]
+
* Gene: [[SJ14435]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22414]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ15628]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17253]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02902]]
+
* Gene: [[SJ16420]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ01976]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6854]], ethylene biosynthesis III (microbes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6854 PWY-6854]
+
* [[PWY-2261]], ascorbate glutathione cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2261 PWY-2261]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5934]], iron reduction and absorption: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5934 PWY-5934]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R09540 R09540]
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00644 R00644]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15063 15063]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30266 30266]
−
* LIGAND-RXN:
+
* UNIPROT:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00092 R00092]
+
** [http://www.uniprot.org/uniprot/P48534 P48534]
 +
** [http://www.uniprot.org/uniprot/Q7M287 Q7M287]
 +
** [http://www.uniprot.org/uniprot/O49159 O49159]
 +
** [http://www.uniprot.org/uniprot/Q7M3G0 Q7M3G0]
 +
** [http://www.uniprot.org/uniprot/Q05431 Q05431]
 +
** [http://www.uniprot.org/uniprot/Q43824 Q43824]
 +
** [http://www.uniprot.org/uniprot/Q41772 Q41772]
 +
** [http://www.uniprot.org/uniprot/Q41371 Q41371]
 +
** [http://www.uniprot.org/uniprot/Q42661 Q42661]
 +
** [http://www.uniprot.org/uniprot/Q42564 Q42564]
 +
** [http://www.uniprot.org/uniprot/O46921 O46921]
 +
** [http://www.uniprot.org/uniprot/P93404 P93404]
 +
** [http://www.uniprot.org/uniprot/Q9FE01 Q9FE01]
 +
** [http://www.uniprot.org/uniprot/O65634 O65634]
 +
** [http://www.uniprot.org/uniprot/Q39843 Q39843]
 +
** [http://www.uniprot.org/uniprot/O49122 O49122]
 +
** [http://www.uniprot.org/uniprot/O49822 O49822]
 +
** [http://www.uniprot.org/uniprot/Q42459 Q42459]
 +
** [http://www.uniprot.org/uniprot/Q39780 Q39780]
 +
** [http://www.uniprot.org/uniprot/Q96399 Q96399]
 +
** [http://www.uniprot.org/uniprot/O81333 O81333]
 +
** [http://www.uniprot.org/uniprot/O81603 O81603]
 +
** [http://www.uniprot.org/uniprot/O81604 O81604]
 +
** [http://www.uniprot.org/uniprot/Q42909 Q42909]
 +
** [http://www.uniprot.org/uniprot/Q9STM9 Q9STM9]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=ferric-chelate reductase|ferric-chelate reductase (nadh)}}
+
{{#set: common-name=l-ascorbate peroxidase}}
−
{{#set: ec-number=ec-1.16.1.7}}
+
{{#set: synonymous=ascorbic acid peroxidase|l-ascorbic acid-specific peroxidase|l-ascorbic acid peroxidase}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:27, 26 August 2019

Reaction RXN-3521

  • direction:
    • left-to-right
  • common-name:
    • l-ascorbate peroxidase
  • synonymous:
    • ascorbic acid peroxidase
    • l-ascorbic acid peroxidase
    • l-ascorbic acid-specific peroxidase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2261, ascorbate glutathione cycle: PWY-2261
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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