Difference between revisions of "HACD5h"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGSUCCINSYN-RXN ARGSUCCINSYN-RXN] == * direction: ** left-to-right * common-name: ** argininosucci...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN] == * direction: ** reversible * common-name: ** phosphate...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGSUCCINSYN-RXN ARGSUCCINSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** argininosuccinate synthase
+
** phosphate acetyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.5 ec-6.3.4.5]
+
** [http://enzyme.expasy.org/EC/2.3.1.8 ec-2.3.1.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[L-CITRULLINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[L-ARGININO-SUCCINATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[ACETYL-P]][c] '''+''' 1 [[CO-A]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10377]]
+
* Gene: [[SJ07682]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ04728]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-5482]], pyruvate fermentation to acetate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5482 PWY-5482]
−
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY0-1312]], acetate and ATP formation from acetyl-CoA I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1312 PWY0-1312]
−
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** '''5''' reactions found over '''4''' reactions in the full pathway
+
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
+
** '''16''' reactions found over '''18''' reactions in the full pathway
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[P163-PWY]], L-lysine fermentation to acetate and butanoate: [http://metacyc.org/META/NEW-IMAGE?object=P163-PWY P163-PWY]
−
* [[PWY-4983]], nitric oxide biosynthesis II (mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4983 PWY-4983]
+
** '''3''' reactions found over '''10''' reactions in the full pathway
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-5485]], pyruvate fermentation to acetate IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5485 PWY-5485]
−
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[P3-PWY]], gallate degradation III (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P3-PWY P3-PWY]
 +
** '''3''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii): [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[METH-ACETATE-PWY]], methanogenesis from acetate: [http://metacyc.org/META/NEW-IMAGE?object=METH-ACETATE-PWY METH-ACETATE-PWY]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-1281]], sulfoacetaldehyde degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1281 PWY-1281]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6637]], sulfolactate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6637 PWY-6637]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[P161-PWY]], acetylene degradation (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P161-PWY P161-PWY]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10932 10932]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19524 19524]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01954 R01954]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00230 R00230]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P22768 P22768]
+
** [http://www.uniprot.org/uniprot/P38503 P38503]
−
** [http://www.uniprot.org/uniprot/P0A6E4 P0A6E4]
+
** [http://www.uniprot.org/uniprot/P47541 P47541]
−
** [http://www.uniprot.org/uniprot/P00966 P00966]
+
** [http://www.uniprot.org/uniprot/P45107 P45107]
−
** [http://www.uniprot.org/uniprot/P16460 P16460]
+
** [http://www.uniprot.org/uniprot/Q9PPL9 Q9PPL9]
−
** [http://www.uniprot.org/uniprot/P13256 P13256]
+
** [http://www.uniprot.org/uniprot/Q9CF22 Q9CF22]
−
** [http://www.uniprot.org/uniprot/P13257 P13257]
+
** [http://www.uniprot.org/uniprot/P0A9M8 P0A9M8]
−
** [http://www.uniprot.org/uniprot/P09034 P09034]
+
** [http://www.uniprot.org/uniprot/Q9RY77 Q9RY77]
−
** [http://www.uniprot.org/uniprot/P24532 P24532]
+
** [http://www.uniprot.org/uniprot/P75359 P75359]
−
** [http://www.uniprot.org/uniprot/Q9PHK7 Q9PHK7]
+
** [http://www.uniprot.org/uniprot/P73662 P73662]
−
** [http://www.uniprot.org/uniprot/P57799 P57799]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q60174 Q60174]
+
{{#set: common-name=phosphate acetyltransferase}}
−
** [http://www.uniprot.org/uniprot/P44315 P44315]
+
{{#set: ec-number=ec-2.3.1.8}}
−
** [http://www.uniprot.org/uniprot/Q9JWM1 Q9JWM1]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P50986 P50986]
+
{{#set: nb pathway associated=13}}
−
** [http://www.uniprot.org/uniprot/Q06734 Q06734]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P0C1A1 P0C1A1]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q59491 Q59491]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=argininosuccinate synthase}}
 
−
{{#set: ec-number=ec-6.3.4.5}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=6}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction PHOSACETYLTRANS-RXN

  • direction:
    • reversible
  • common-name:
    • phosphate acetyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5482, pyruvate fermentation to acetate II: PWY-5482
    • 2 reactions found over 3 reactions in the full pathway
  • PWY0-1312, acetate and ATP formation from acetyl-CoA I: PWY0-1312
    • 1 reactions found over 2 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • P163-PWY, L-lysine fermentation to acetate and butanoate: P163-PWY
    • 3 reactions found over 10 reactions in the full pathway
  • PWY-5485, pyruvate fermentation to acetate IV: PWY-5485
    • 2 reactions found over 3 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • P3-PWY, gallate degradation III (anaerobic): P3-PWY
    • 3 reactions found over 11 reactions in the full pathway
  • PWY4LZ-257, superpathway of fermentation (Chlamydomonas reinhardtii): PWY4LZ-257
    • 7 reactions found over 7 reactions in the full pathway
  • METH-ACETATE-PWY, methanogenesis from acetate: METH-ACETATE-PWY
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-1281, sulfoacetaldehyde degradation I: PWY-1281
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6637, sulfolactate degradation II: PWY-6637
    • 1 reactions found over 4 reactions in the full pathway
  • P161-PWY, acetylene degradation (anaerobic): P161-PWY
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 10 reactions found over 24 reactions in the full pathway

Reconstruction information

External links





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