Difference between revisions of "HACD7h"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LUMAZINESYN-RXN LUMAZINESYN-RXN] == * direction: ** left-to-right * common-name: ** 6,7-dimethyl-8-...")
(Created page with "Category:reaction == Reaction LIPOXYGENASE-RXN == * direction: ** left-to-right * common-name: ** linoleate 13s-lipoxygenase * ec-number: ** [http://enzyme.expasy.org/EC/1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LUMAZINESYN-RXN LUMAZINESYN-RXN] ==
+
== Reaction LIPOXYGENASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 6,7-dimethyl-8-ribityllumazine synthase
+
** linoleate 13s-lipoxygenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78]
+
** [http://enzyme.expasy.org/EC/1.13.11.12 ec-1.13.11.12]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''=>''' 1 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[LINOLEIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[13-HYDROPEROXYOCTADECA-911-DIENOATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04442]]
+
* Gene: [[SJ16632]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ03316]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08291]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16633]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12567]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
+
* [[PWY-5410]], traumatin and (Z)-3-hexen-1-yl acetate biosynthesis:
−
** '''5''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
+
* [[PWY-5409]], divinyl ether biosynthesis II:
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22781 22781]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04457 R04457]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03626 R03626]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26152 26152]
+
** [http://www.uniprot.org/uniprot/P09439 P09439]
 +
** [http://www.uniprot.org/uniprot/P08170 P08170]
 +
** [http://www.uniprot.org/uniprot/Q06327 Q06327]
 +
** [http://www.uniprot.org/uniprot/P38418 P38418]
 +
** [http://www.uniprot.org/uniprot/Q9S8X5 Q9S8X5]
 +
** [http://www.uniprot.org/uniprot/P09918 P09918]
 +
** [http://www.uniprot.org/uniprot/P14856 P14856]
 +
** [http://www.uniprot.org/uniprot/P24095 P24095]
 +
** [http://www.uniprot.org/uniprot/Q41244 Q41244]
 +
** [http://www.uniprot.org/uniprot/Q41245 Q41245]
 +
** [http://www.uniprot.org/uniprot/Q9S9D8 Q9S9D8]
 +
** [http://www.uniprot.org/uniprot/P27481 P27481]
 +
** [http://www.uniprot.org/uniprot/P27480 P27480]
 +
** [http://www.uniprot.org/uniprot/P29250 P29250]
 +
** [http://www.uniprot.org/uniprot/P37831 P37831]
 +
** [http://www.uniprot.org/uniprot/Q43817 Q43817]
 +
** [http://www.uniprot.org/uniprot/Q43800 Q43800]
 +
** [http://www.uniprot.org/uniprot/Q42710 Q42710]
 +
** [http://www.uniprot.org/uniprot/P29114 P29114]
 +
** [http://www.uniprot.org/uniprot/Q42846 Q42846]
 +
** [http://www.uniprot.org/uniprot/Q42847 Q42847]
 +
** [http://www.uniprot.org/uniprot/P93184 P93184]
 +
** [http://www.uniprot.org/uniprot/P93190 P93190]
 +
** [http://www.uniprot.org/uniprot/Q41520 Q41520]
 +
** [http://www.uniprot.org/uniprot/P38416 P38416]
 +
** [http://www.uniprot.org/uniprot/Q42873 Q42873]
 +
** [http://www.uniprot.org/uniprot/Q43438 Q43438]
 +
** [http://www.uniprot.org/uniprot/Q43440 Q43440]
 +
** [http://www.uniprot.org/uniprot/O24295 O24295]
 +
** [http://www.uniprot.org/uniprot/Q42780 Q42780]
 +
** [http://www.uniprot.org/uniprot/O24470 O24470]
 +
** [http://www.uniprot.org/uniprot/Q43501 Q43501]
 +
** [http://www.uniprot.org/uniprot/Q43446 Q43446]
 +
** [http://www.uniprot.org/uniprot/O49878 O49878]
 +
** [http://www.uniprot.org/uniprot/O49880 O49880]
 +
** [http://www.uniprot.org/uniprot/O24370 O24370]
 +
** [http://www.uniprot.org/uniprot/O24371 O24371]
 +
** [http://www.uniprot.org/uniprot/Q41430 Q41430]
 +
** [http://www.uniprot.org/uniprot/Q96573 Q96573]
 +
** [http://www.uniprot.org/uniprot/Q96574 Q96574]
 +
** [http://www.uniprot.org/uniprot/P38417 P38417]
 +
** [http://www.uniprot.org/uniprot/Q39874 Q39874]
 +
** [http://www.uniprot.org/uniprot/Q39875 Q39875]
 +
** [http://www.uniprot.org/uniprot/Q43191 Q43191]
 +
** [http://www.uniprot.org/uniprot/Q39611 Q39611]
 +
** [http://www.uniprot.org/uniprot/Q42705 Q42705]
 +
** [http://www.uniprot.org/uniprot/P93698 P93698]
 +
** [http://www.uniprot.org/uniprot/O24320 O24320]
 +
** [http://www.uniprot.org/uniprot/O04919 O04919]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=6,7-dimethyl-8-ribityllumazine synthase}}
+
{{#set: common-name=linoleate 13s-lipoxygenase}}
−
{{#set: ec-number=ec-2.5.1.78}}
+
{{#set: ec-number=ec-1.13.11.12}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 20:39, 18 December 2020

Reaction LIPOXYGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • linoleate 13s-lipoxygenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5410, traumatin and (Z)-3-hexen-1-yl acetate biosynthesis:
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5409, divinyl ether biosynthesis II:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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