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| − | [[Category:reaction]] | + | [[Category:pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=COA-PWY-1 COA-PWY-1] == |
| − | * direction: | + | * taxonomic-range: |
| − | ** left-to-right | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-40674 tax-40674] |
| | * common-name: | | * common-name: |
| − | ** protoporphyrinogen oxidase | + | ** superpathway of coenzyme a biosynthesis iii (mammals) |
| − | * ec-number:
| + | == Reaction(s) found == |
| − | ** [http://enzyme.expasy.org/EC/1.3.3.4 ec-1.3.3.4]
| + | * [[PANTOTHENATE-KIN-RXN]] |
| − | == Reaction formula == | + | == Reaction(s) not found == |
| − | * 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 3 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
| + | All reactions of this pathways are in present |
| − | == Gene(s) associated with this reaction ==
| + | {{#set: taxonomic-range=tax-40674}} |
| − | * Gene: [[SJ21798]] | + | {{#set: common-name=superpathway of coenzyme a biosynthesis iii (mammals)}} |
| − | ** Category: [[annotation]]
| + | {{#set: nb reaction found=1}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | {{#set: completion rate=1.0}} |
| − | ** Category: [[orthology]]
| + | {{#set: nb total reaction=1}} |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | == Pathway(s) == | |
| − | * [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
| |
| − | ** '''5''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
| |
| − | ** '''5''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
| |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
| |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| − | == External links ==
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25577 25577]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P50336 P50336]
| |
| − | ** [http://www.uniprot.org/uniprot/Q49404 Q49404]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
| |
| − | ** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
| |
| − | ** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
| |
| − | ** [http://www.uniprot.org/uniprot/P51175 P51175]
| |
| − | ** [http://www.uniprot.org/uniprot/O24163 O24163]
| |
| − | ** [http://www.uniprot.org/uniprot/O24164 O24164]
| |
| − | ** [http://www.uniprot.org/uniprot/O64384 O64384]
| |
| − | ** [http://www.uniprot.org/uniprot/O64385 O64385]
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=protoporphyrinogen oxidase}} | |
| − | {{#set: ec-number=ec-1.3.3.4}} | |
| − | {{#set: nb gene associated=1}} | |
| − | {{#set: nb pathway associated=4}} | |
| − | {{#set: reconstruction category=orthology|annotation}}
| |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
| |
