Difference between revisions of "HCN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLUCONDEHYDRAT-RXN PGLUCONDEHYDRAT-RXN] == * direction: ** left-to-right * ec-number: ** [http://e...")
 
(Created page with "Category:gene == Gene SJ15153 == * transcription-direction: ** positive * right-end-position: ** 39036 * left-end-position: ** 30494 * centisome-position: ** 10.143973...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLUCONDEHYDRAT-RXN PGLUCONDEHYDRAT-RXN] ==
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== Gene SJ15153 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** positive
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* ec-number:
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* right-end-position:
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** [http://enzyme.expasy.org/EC/4.2.1.12 ec-4.2.1.12]
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** 39036
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== Reaction formula ==
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* left-end-position:
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* 1 [[CPD-2961]][c] '''=>''' 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''+''' 1 [[WATER]][c]
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** 30494
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[SJ19719]]
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** 10.143973   
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** Category: [[orthology]]
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== Organism(s) associated with this gene  ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[S.japonica_carotenoid_curated]]
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== Pathway(s)  ==
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== Reaction(s) associated ==
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* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt: [http://metacyc.org/META/NEW-IMAGE?object=ENTNER-DOUDOROFF-PWY ENTNER-DOUDOROFF-PWY]
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* [[ATPASE-RXN]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** Category: [[annotation]]
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== Reconstruction information  ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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== External links  ==
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** Category: [[annotation]]
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* RHEA:
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17278 17278]
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* [[RXN-12195]]
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* LIGAND-RXN:
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** Category: [[annotation]]
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** [http://www.genome.jp/dbget-bin/www_bget?R02036 R02036]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* UNIPROT:
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* [[RXN-12196]]
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** [http://www.uniprot.org/uniprot/P0ADF6 P0ADF6]
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** Category: [[annotation]]
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** [http://www.uniprot.org/uniprot/P21909 P21909]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.uniprot.org/uniprot/P56111 P56111]
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* [[RXN0-5462]]
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** [http://www.uniprot.org/uniprot/Q9JTV9 Q9JTV9]
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** Category: [[annotation]]
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** [http://www.uniprot.org/uniprot/Q02139 Q02139]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.uniprot.org/uniprot/Q44327 Q44327]
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== Pathway(s) associated ==
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{{#set: direction=left-to-right}}
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* [[PWY-7210]]
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{{#set: ec-number=ec-4.2.1.12}}
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** '''8''' reactions found over '''8''' reactions in the full pathway
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{{#set: nb gene associated=1}}
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* [[PWY-7198]]
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{{#set: nb pathway associated=1}}
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** '''6''' reactions found over '''7''' reactions in the full pathway
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{{#set: reconstruction category=orthology}}
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* [[PWY-7184]]
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{{#set: reconstruction tool=pantograph}}
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** '''9''' reactions found over '''9''' reactions in the full pathway
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{{#set: reconstruction comment=n.a}}
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* [[PWY-6545]]
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=39036}}
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{{#set: left-end-position=30494}}
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{{#set: centisome-position=10.143973    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=5}}
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{{#set: nb pathway associated=4}}

Revision as of 14:24, 26 August 2019

Gene SJ15153

  • transcription-direction:
    • positive
  • right-end-position:
    • 39036
  • left-end-position:
    • 30494
  • centisome-position:
    • 10.143973

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=HCN&oldid=21182"