Difference between revisions of "HOLOCYTOCHROME-C-SYNTHASE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALIC-NADP-RXN MALIC-NADP-RXN] == * direction: ** left-to-right * common-name: ** malate dehydrogen...")
(Created page with "Category:reaction == Reaction RXN-19202 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.13 ec-1.14.13] == Reaction formula == * 1 CPD-...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALIC-NADP-RXN MALIC-NADP-RXN] ==
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== Reaction RXN-19202 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
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* common-name:
 
−
** malate dehydrogenase
 
−
** oxaloacetate decarboxylase
 
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40]
+
** [http://enzyme.expasy.org/EC/1.14.13 ec-1.14.13]
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[MAL]][c] '''+''' 1 [[NADP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PYRUVATE]][c]
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* 1 [[CPD-20693]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-20680]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13180]]
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* Gene: [[SJ20456]]
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** Category: [[annotation]]
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** Category: [[manual]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
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* Gene: [[SJ14191]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ11643]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
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* [[PWY-7949]], diadinoxanthin and diatoxanthin interconversion:
−
** '''10''' reactions found over '''12''' reactions in the full pathway
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[sjap]]; tool: [[curation]]; comment: transformation of diadinoxanthin into diatoxanthin (second cycle of xanthophylls)
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18254 18254]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00216 R00216]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P12628 P12628]
 
−
** [http://www.uniprot.org/uniprot/P06801 P06801]
 
−
** [http://www.uniprot.org/uniprot/P13697 P13697]
 
−
** [http://www.uniprot.org/uniprot/P16243 P16243]
 
−
** [http://www.uniprot.org/uniprot/O48656 O48656]
 
−
** [http://www.uniprot.org/uniprot/P22178 P22178]
 
−
** [http://www.uniprot.org/uniprot/P93139 P93139]
 
−
** [http://www.uniprot.org/uniprot/P34105 P34105]
 
−
** [http://www.uniprot.org/uniprot/P28227 P28227]
 
−
** [http://www.uniprot.org/uniprot/P36444 P36444]
 
−
** [http://www.uniprot.org/uniprot/P40927 P40927]
 
−
** [http://www.uniprot.org/uniprot/P37223 P37223]
 
−
** [http://www.uniprot.org/uniprot/P48163 P48163]
 
−
** [http://www.uniprot.org/uniprot/Q16798 Q16798]
 
−
** [http://www.uniprot.org/uniprot/O50015 O50015]
 
−
** [http://www.uniprot.org/uniprot/O04935 O04935]
 
−
** [http://www.uniprot.org/uniprot/O04936 O04936]
 
−
** [http://www.uniprot.org/uniprot/P37222 P37222]
 
−
** [http://www.uniprot.org/uniprot/Q42888 Q42888]
 
−
** [http://www.uniprot.org/uniprot/Q42889 Q42889]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=malate dehydrogenase|oxaloacetate decarboxylase}}
+
{{#set: ec-number=ec-1.14.13}}
−
{{#set: ec-number=ec-1.1.1.40}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction comment=transformation of diadinoxanthin into diatoxanthin (second cycle of xanthophylls)}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=sjap}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}
 

Revision as of 20:43, 18 December 2020

Reaction RXN-19202

Reaction formula

Gene(s) associated with this reaction

  • Gene: SJ20456
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)

Pathway(s)

  • PWY-7949, diadinoxanthin and diatoxanthin interconversion:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

  • category: manual; source: sjap; tool: curation; comment: transformation of diadinoxanthin into diatoxanthin (second cycle of xanthophylls)

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=HOLOCYTOCHROME-C-SYNTHASE-RXN&oldid=50541"