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| − | [[Category:reaction]] | + | [[Category:metabolite]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPKIN-RXN CDPKIN-RXN] == | + | == Metabolite HOMO-CYS == |
| − | * direction:
| |
| − | ** left-to-right
| |
| | * common-name: | | * common-name: |
| − | ** cdp kinase | + | ** l-homocysteine |
| − | ** nucleoside diphosphate kinase
| + | * smiles: |
| − | * ec-number: | + | ** c(c(ccs)[n+])(=o)[o-] |
| − | ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] | + | * inchi-key: |
| − | == Reaction formula ==
| + | ** fffhzydwpbmwhy-vkhmyheasa-n |
| − | * 1 [[ATP]][c] '''+''' 1 [[CDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CTP]][c]
| + | * molecular-weight: |
| − | == Gene(s) associated with this reaction == | + | ** 135.181 |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | == Reaction(s) known to consume the compound == |
| − | * Gene: [[SJ07124]]
| + | * [[2.1.1.5-RXN]] |
| − | ** Category: [[annotation]] | + | * [[ACETYLHOMOSER-CYS-RXN]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | * [[ADENOSYLHOMOCYSTEINASE-RXN]] |
| − | ** Category: [[orthology]] | + | * [[CYSTATHIONINE-BETA-SYNTHASE-RXN]] |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | + | * [[HOMOCYSMET-RXN]] |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | * [[HOMOCYSMETB12-RXN]] |
| − | * Gene: [[SJ21705]] | + | * [[HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31.]] |
| − | ** Category: [[annotation]]
| + | * [[HOMOCYSTEINE-DESULFHYDRASE-RXN]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | * [[HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN]] |
| − | ** Category: [[orthology]]
| + | * [[MMUM-RXN]] |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | * [[RXN-15148]] |
| − | * Gene: [[SJ21967]]
| + | * [[RXN-9384]] |
| − | ** Category: [[annotation]] | + | == Reaction(s) known to produce the compound == |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | + | * [[ACETYLHOMOSER-CYS-RXN]] |
| − | * Gene: [[SJ20794]]
| + | * [[ADENOSYLHOMOCYSTEINASE-RXN]] |
| − | ** Category: [[annotation]] | + | * [[CYSTATHIONINE-BETA-SYNTHASE-RXN]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | + | * [[HOMOCYSMET-RXN]] |
| − | * Gene: [[SJ10125]]
| + | * [[RXN-9384]] |
| − | ** Category: [[annotation]] | + | == Reaction(s) of unknown directionality == |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | {{#set: common-name=l-homocysteine}} |
| − | ** Category: [[orthology]]
| + | {{#set: inchi-key=inchikey=fffhzydwpbmwhy-vkhmyheasa-n}} |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | {{#set: molecular-weight=135.181}} |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ16893]] | |
| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ21816]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ20076]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[SJ08159]]
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | </div>
| |
| − | == Pathway(s) == | |
| − | * [[PWY-7205]], CMP phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7205 PWY-7205] | |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway | |
| − | == Reconstruction information ==
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | |
| − | == External links == | |
| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25238 25238]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00570 R00570]
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| − | {{#set: direction=left-to-right}}
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| − | {{#set: common-name=cdp kinase|nucleoside diphosphate kinase}} | |
| − | {{#set: ec-number=ec-2.7.4.6}} | |
| − | {{#set: nb gene associated=9}} | |
| − | {{#set: nb pathway associated=1}}
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| − | {{#set: reconstruction category=orthology|annotation}}
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| − | {{#set: reconstruction tool=pathwaytools|pantograph}}
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| − | {{#set: reconstruction comment=n.a}}
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| − | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
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