Difference between revisions of "HOMOCYSMET-RXN"

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(Created page with "Category:reaction == Reaction RXN-16149 == * direction: ** left-to-right * common-name: ** ricinoleoyl-lipid 15-desaturase * ec-number: ** [http://enzyme.expasy.org/EC/1.1...")
(Created page with "Category:reaction == Reaction HOMOCYSMET-RXN == * direction: ** reversible * common-name: ** cobalamin-independent homocysteine transmethylase * ec-number: ** [http://enzy...")
 
(5 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-16149 ==
+
== Reaction HOMOCYSMET-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** ricinoleoyl-lipid 15-desaturase
+
** cobalamin-independent homocysteine transmethylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.19.25 ec-1.14.19.25]
+
** [http://enzyme.expasy.org/EC/2.1.1.14 ec-2.1.1.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-17396]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-17397]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[CPD-1302]][c] '''+''' 1 [[HOMO-CYS]][c] '''<=>''' 1 [[CPD-1301]][c] '''+''' 1 [[MET]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09228]]
+
* Gene: [[SJ03226]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03069]]
+
* Gene: [[SJ10794]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6433]], hydroxylated fatty acid biosynthesis (plants):
+
* [[PWY-702]], L-methionine biosynthesis II:
−
** '''17''' reactions found over '''22''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5041]], S-adenosyl-L-methionine salvage II:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[HSERMETANA-PWY]], L-methionine biosynthesis III:
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6151]], S-adenosyl-L-methionine salvage I:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* METANETX-RXN : MNXR101555
−
{{#set: common-name=ricinoleoyl-lipid 15-desaturase}}
+
* RHEA:
−
{{#set: ec-number=ec-1.14.19.25}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21199 21199]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04405 R04405]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P25665 P25665]
 +
** [http://www.uniprot.org/uniprot/P45331 P45331]
 +
** [http://www.uniprot.org/uniprot/Q9PN94 Q9PN94]
 +
** [http://www.uniprot.org/uniprot/O26869 O26869]
 +
** [http://www.uniprot.org/uniprot/Q9JUT6 Q9JUT6]
 +
** [http://www.uniprot.org/uniprot/Q9CG55 Q9CG55]
 +
** [http://www.uniprot.org/uniprot/P05694 P05694]
 +
** [http://www.uniprot.org/uniprot/Q42699 Q42699]
 +
** [http://www.uniprot.org/uniprot/Q39586 Q39586]
 +
** [http://www.uniprot.org/uniprot/O48613 O48613]
 +
** [http://www.uniprot.org/uniprot/P93263 P93263]
 +
** [http://www.uniprot.org/uniprot/Q9UT19 Q9UT19]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=cobalamin-independent homocysteine transmethylase}}
 +
{{#set: ec-number=ec-2.1.1.14}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction HOMOCYSMET-RXN

  • direction:
    • reversible
  • common-name:
    • cobalamin-independent homocysteine transmethylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-702, L-methionine biosynthesis II:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5041, S-adenosyl-L-methionine salvage II:
    • 3 reactions found over 3 reactions in the full pathway
  • HSERMETANA-PWY, L-methionine biosynthesis III:
    • 3 reactions found over 2 reactions in the full pathway
  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6151, S-adenosyl-L-methionine salvage I:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=HOMOCYSMET-RXN&oldid=140007"