Difference between revisions of "HOMOCYSMETB12-RXN"

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(Created page with "Category:reaction == Reaction ExchangeSeed-MN+2 == * direction: ** reversible == Reaction formula == * 1.0 MN+2[C-BOUNDARY] '''<=>''' 1.0 MN+2[e] == Gene(s) associ...")
(Created page with "Category:reaction == Reaction HOMOCYSMETB12-RXN == * direction: ** left-to-right * common-name: ** methionine synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-MN+2 ==
+
== Reaction HOMOCYSMETB12-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** methionine synthase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.1.1.13 ec-2.1.1.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[MN+2]][C-BOUNDARY] '''<=>''' 1.0 [[MN+2]][e]
+
* 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[THF-GLU-N]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ03226]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[HSERMETANA-PWY]], L-methionine biosynthesis III:
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II (plants):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[1CMET2-PWY]], folate transformations III (E. coli):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I:
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* METANETX-RXN : MNXR115965
−
{{#set: nb gene associated=0}}
+
* RHEA:
−
{{#set: nb pathway associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11173 11173]
−
{{#set: reconstruction category=manual}}
+
* LIGAND-RXN:
−
{{#set: reconstruction tool=curation}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
* UNIPROT:
−
{{#set: reconstruction source=import_from_medium}}
+
** [http://www.uniprot.org/uniprot/Q57195 Q57195]
 +
** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
 +
** [http://www.uniprot.org/uniprot/O33259 O33259]
 +
** [http://www.uniprot.org/uniprot/Q55786 Q55786]
 +
** [http://www.uniprot.org/uniprot/Q09582 Q09582]
 +
** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
 +
** [http://www.uniprot.org/uniprot/P13009 P13009]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=methionine synthase}}
 +
{{#set: ec-number=ec-2.1.1.13}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=6}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction HOMOCYSMETB12-RXN

  • direction:
    • left-to-right
  • common-name:
    • methionine synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
    • 4 reactions found over 5 reactions in the full pathway
  • HSERMETANA-PWY, L-methionine biosynthesis III:
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 9 reactions found over 11 reactions in the full pathway
  • 1CMET2-PWY, folate transformations III (E. coli):
    • 8 reactions found over 9 reactions in the full pathway
  • ADENOSYLHOMOCYSCAT-PWY, L-methionine salvage from L-homocysteine:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-2201, folate transformations I:
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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