Difference between revisions of "HOMOCYSMETB12-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.145-RXN 1.1.1.145-RXN] == * direction: ** reversible * common-name: ** 3-beta-hydroxy-delta5-...")
(Created page with "Category:reaction == Reaction HOMOCYSMETB12-RXN == * direction: ** left-to-right * common-name: ** methionine synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.145-RXN 1.1.1.145-RXN] ==
+
== Reaction HOMOCYSMETB12-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-beta-hydroxy-delta5-steroid dehydrogenase
+
** methionine synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.145 ec-1.1.1.145]
+
** [http://enzyme.expasy.org/EC/2.1.1.13 ec-2.1.1.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3b-hydroxy-D5-steroids]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-oxo-D5-steroids]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[THF-GLU-N]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ03226]]
−
* Gene: [[SJ21137]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ04782]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01092]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21972]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10476]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04385]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19982]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03340]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21834]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21018]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03341]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06332]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08509]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19806]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02713]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16241]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10400]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17700]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[HSERMETANA-PWY]], L-methionine biosynthesis III:
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II (plants):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[1CMET2-PWY]], folate transformations III (E. coli):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I:
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR115965
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24079 24079]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11173 11173]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03176 R03176]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P27364 P27364]
+
** [http://www.uniprot.org/uniprot/Q57195 Q57195]
−
** [http://www.uniprot.org/uniprot/Q62878 Q62878]
+
** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
−
** [http://www.uniprot.org/uniprot/Q61767 Q61767]
+
** [http://www.uniprot.org/uniprot/O33259 O33259]
−
** [http://www.uniprot.org/uniprot/P27365 P27365]
+
** [http://www.uniprot.org/uniprot/Q55786 Q55786]
−
** [http://www.uniprot.org/uniprot/Q61694 Q61694]
+
** [http://www.uniprot.org/uniprot/Q09582 Q09582]
−
** [http://www.uniprot.org/uniprot/P14893 P14893]
+
** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
−
** [http://www.uniprot.org/uniprot/P26439 P26439]
+
** [http://www.uniprot.org/uniprot/P13009 P13009]
−
** [http://www.uniprot.org/uniprot/P14060 P14060]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P22071 P22071]
+
{{#set: common-name=methionine synthase}}
−
** [http://www.uniprot.org/uniprot/P22072 P22072]
+
{{#set: ec-number=ec-2.1.1.13}}
−
** [http://www.uniprot.org/uniprot/P24815 P24815]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/Q91997 Q91997]
+
{{#set: nb pathway associated=6}}
−
** [http://www.uniprot.org/uniprot/Q67477 Q67477]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q91381 Q91381]
 
−
** [http://www.uniprot.org/uniprot/Q98318 Q98318]
 
−
** [http://www.uniprot.org/uniprot/P21097 P21097]
 
−
** [http://www.uniprot.org/uniprot/P26670 P26670]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=3-beta-hydroxy-delta5-steroid dehydrogenase}}
 
−
{{#set: ec-number=ec-1.1.1.145}}
 
−
{{#set: nb gene associated=19}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction HOMOCYSMETB12-RXN

  • direction:
    • left-to-right
  • common-name:
    • methionine synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
    • 4 reactions found over 5 reactions in the full pathway
  • HSERMETANA-PWY, L-methionine biosynthesis III:
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 9 reactions found over 11 reactions in the full pathway
  • 1CMET2-PWY, folate transformations III (E. coli):
    • 8 reactions found over 9 reactions in the full pathway
  • ADENOSYLHOMOCYSCAT-PWY, L-methionine salvage from L-homocysteine:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-2201, folate transformations I:
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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