Difference between revisions of "HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31."

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(Created page with "Category:reaction == Reaction RXN-10815 == * direction: ** left-to-right * common-name: ** 2-oxo-3-phenylpropanoate dioxygenase ** phenylpyruvate dioxygenase * ec-number:...")
(Created page with "Category:reaction == Reaction HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31. == * direction: ** left-to-right == Reaction formula == * 1.0 5-METHYL-THF[c] '''+''...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-10815 ==
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== Reaction HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31. ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 2-oxo-3-phenylpropanoate dioxygenase
 
−
** phenylpyruvate dioxygenase
 
−
* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.13.11.27 ec-1.13.11.27]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-11495]][c]
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* 1.0 [[5-METHYL-THF]][c] '''+''' 1.0 [[HOMO-CYS]][c] '''=>''' 1.0 [[MET]][c] '''+''' 1.0 [[THF]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08953]]
 
−
** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ08954]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-6318]], L-phenylalanine degradation IV (mammalian, via side chain):
 
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** '''4''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31108 31108]
 
−
* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01372 R01372]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2-oxo-3-phenylpropanoate dioxygenase|phenylpyruvate dioxygenase}}
+
{{#set: nb gene associated=0}}
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{{#set: ec-number=ec-1.13.11.27}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=2}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction comment=added for gapfilling}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:22, 18 March 2021

Reaction HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31.

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31.&oldid=141818"