Difference between revisions of "HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN"

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(Created page with "Category:reaction == Reaction SUCCCOASYN-RXN == * direction: ** reversible * common-name: ** succinyl-coa synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.5 e...")
(Created page with "Category:reaction == Reaction PHOSPHOLIPASE-A1-RXN == * direction: ** left-to-right * common-name: ** phosphatidylcholine 1-acylhydrolase ** 1-lysophosphatidylcholine acyl...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SUCCCOASYN-RXN ==
+
== Reaction PHOSPHOLIPASE-A1-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** succinyl-coa synthetase
+
** phosphatidylcholine 1-acylhydrolase
 +
** 1-lysophosphatidylcholine acylhydrolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.5 ec-6.2.1.5]
+
** [http://enzyme.expasy.org/EC/3.1.1.32 ec-3.1.1.32]
−
* synonymous:
 
−
** succinate thiokinase
 
−
** succinyl coa synthesis
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
+
* 1 [[PHOSPHATIDYLCHOLINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-Acylglycero-Phosphocholines]][c] '''+''' 1 [[Fatty-Acids]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21782]]
+
* Gene: [[SJ02841]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21874]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01382]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14819]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ22570]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03269]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[LIPASYN-PWY]], phospholipases:
−
* [[P42-PWY]], incomplete reductive TCA cycle:
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-6803]], phosphatidylcholine acyl editing:
−
* [[PWY-5392]], reductive TCA cycle II:
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi):
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5538]], pyruvate fermentation to acetate VI:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5537]], pyruvate fermentation to acetate V:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic):
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I:
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle:
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17664 17664]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18690 18690]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01314 R01314]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O28098 O28098]
+
** [http://www.uniprot.org/uniprot/P53357 P53357]
−
** [http://www.uniprot.org/uniprot/P53594 P53594]
+
** [http://www.uniprot.org/uniprot/P51528 P51528]
−
** [http://www.uniprot.org/uniprot/O28733 O28733]
+
** [http://www.uniprot.org/uniprot/Q9PMU8 Q9PMU8]
−
** [http://www.uniprot.org/uniprot/P45101 P45101]
+
** [http://www.uniprot.org/uniprot/P0A921 P0A921]
−
** [http://www.uniprot.org/uniprot/P45102 P45102]
+
** [http://www.uniprot.org/uniprot/P18952 P18952]
−
** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q58643 Q58643]
+
{{#set: common-name=phosphatidylcholine 1-acylhydrolase|1-lysophosphatidylcholine acylhydrolase}}
−
** [http://www.uniprot.org/uniprot/O26663 O26663]
+
{{#set: ec-number=ec-3.1.1.32}}
−
** [http://www.uniprot.org/uniprot/P80886 P80886]
+
{{#set: nb gene associated=5}}
−
** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P80865 P80865]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
 
−
** [http://www.uniprot.org/uniprot/O67729 O67729]
 
−
** [http://www.uniprot.org/uniprot/O67546 O67546]
 
−
** [http://www.uniprot.org/uniprot/P53593 P53593]
 
−
** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
 
−
** [http://www.uniprot.org/uniprot/P0A836 P0A836]
 
−
** [http://www.uniprot.org/uniprot/O82662 O82662]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=succinyl-coa synthetase}}
 
−
{{#set: ec-number=ec-6.2.1.5}}
 
−
{{#set: synonymous=succinyl coa synthesis|succinate thiokinase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=12}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:20, 15 January 2021

Reaction PHOSPHOLIPASE-A1-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphatidylcholine 1-acylhydrolase
    • 1-lysophosphatidylcholine acylhydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • LIPASYN-PWY, phospholipases:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6803, phosphatidylcholine acyl editing:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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