Difference between revisions of "HYDROG-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11474 RXN-11474] == * direction: ** left-to-right * common-name: ** 3-oxo-glutaryl-[acp] methyl...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14021 RXN-14021] == * direction: ** left-to-right * common-name: ** β-d-4-deoxy-gluc-4-enu...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11474 RXN-11474] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14021 RXN-14021] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxo-glutaryl-[acp] methyl ester synthase
+
** β-d-4-deoxy-gluc-4-enuronosyl-2-sulfate-(1,3)-n-acetyl-β-d-galactosamine hydrolase
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/3.2.1.180 ec-3.2.1.180]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
+
** [http://enzyme.expasy.org/EC/3.2.1.179 ec-3.2.1.179]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[Malonyl-acp-methyl-ester]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-Ketoglutaryl-ACP-methyl-ester]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[CPD-15035]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-15036]][c] '''+''' 1 [[N-acetyl-D-galactosamine]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ15657]]
−
* Gene: [[SJ15984]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ10624]]
+
* Gene: [[SJ13212]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00005]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6519 PWY-6519]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31658 31658]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxo-glutaryl-[acp] methyl ester synthase|3-oxoacyl-[acyl-carrier-protein] synthase}}
+
{{#set: common-name=&beta;-d-4-deoxy-gluc-4-enuronosyl-2-sulfate-(1,3)-n-acetyl-&beta;-d-galactosamine hydrolase}}
−
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
+
{{#set: ec-number=ec-3.2.1.180|ec-3.2.1.179}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:28, 26 August 2019

Reaction RXN-14021

  • direction:
    • left-to-right
  • common-name:
    • β-d-4-deoxy-gluc-4-enuronosyl-2-sulfate-(1,3)-n-acetyl-β-d-galactosamine hydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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