Difference between revisions of "HYDROXY-METHYL-BUTENYL-DIP"

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(Created page with "Category:gene == Gene SJ14933 == * transcription-direction: ** negative * right-end-position: ** 8416 * left-end-position: ** 4923 * centisome-position: ** 56.99236 ==...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPSYN-RXN PRPPSYN-RXN] == * direction: ** reversible * common-name: ** ribose phosphate diphospho...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ14933 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPSYN-RXN PRPPSYN-RXN] ==
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* transcription-direction:
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* direction:
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** negative
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** reversible
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* right-end-position:
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* common-name:
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** 8416
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** ribose phosphate diphosphokinase
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* left-end-position:
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** ribose-phosphate diphosphokinase
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** 4923
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* ec-number:
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* centisome-position:
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** [http://enzyme.expasy.org/EC/2.7.6.1 ec-2.7.6.1]
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** 56.99236   
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== Reaction formula ==
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== Organism(s) associated with this gene  ==
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* 1 [[ATP]][c] '''+''' 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PRPP]][c]
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* [[S.japonica_carotenoid_curated]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN]]
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* Gene: [[SJ07300]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN]]
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** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08336]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[PURINE-NUCLEOSIDASE-RXN]]
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* Gene: [[SJ17219]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[RXN0-363]]
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** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11019]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* [[RXN0-366]]
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** Category: [[orthology]]
−
** Category: [[annotation]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
== Pathway(s) associated ==
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</div>
 +
== Pathway(s)  ==
 +
* [[PWY0-662]], PRPP biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-662 PWY0-662]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-6153]]
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* RHEA:
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** '''1''' reactions found over '''5''' reactions in the full pathway
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15612 15612]
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* [[PWY-6154]]
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* LIGAND-RXN:
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** '''1''' reactions found over '''6''' reactions in the full pathway
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** [http://www.genome.jp/dbget-bin/www_bget?R01049 R01049]
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* [[PWY-6151]]
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* UNIPROT:
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** '''3''' reactions found over '''4''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q63468 Q63468]
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* [[PWY-I9]]
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** [http://www.uniprot.org/uniprot/Q9CEI4 Q9CEI4]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/O67556 O67556]
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* [[PWY-6754]]
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** [http://www.uniprot.org/uniprot/P44328 P44328]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q9PP15 Q9PP15]
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* [[PWY0-1391]]
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** [http://www.uniprot.org/uniprot/P56184 P56184]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P65235 P65235]
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* [[PWY-6596]]
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** [http://www.uniprot.org/uniprot/Q9CHB8 Q9CHB8]
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** '''7''' reactions found over '''8''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P42816 P42816]
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* [[PWY-6607]]
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** [http://www.uniprot.org/uniprot/Q59988 Q59988]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P14193 P14193]
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* [[PWY-6606]]
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** [http://www.uniprot.org/uniprot/P0A1V6 P0A1V6]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P0A717 P0A717]
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* [[PWY-6599]]
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** [http://www.uniprot.org/uniprot/P60891 P60891]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P11908 P11908]
 +
** [http://www.uniprot.org/uniprot/P21108 P21108]
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** [http://www.uniprot.org/uniprot/P60892 P60892]
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** [http://www.uniprot.org/uniprot/P09330 P09330]
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** [http://www.uniprot.org/uniprot/P32895 P32895]
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** [http://www.uniprot.org/uniprot/Q59489 Q59489]
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** [http://www.uniprot.org/uniprot/P38620 P38620]
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** [http://www.uniprot.org/uniprot/P38063 P38063]
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** [http://www.uniprot.org/uniprot/P38689 P38689]
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** [http://www.uniprot.org/uniprot/Q42581 Q42581]
 +
** [http://www.uniprot.org/uniprot/P41831 P41831]
 +
** [http://www.uniprot.org/uniprot/P46585 P46585]
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** [http://www.uniprot.org/uniprot/Q42583 Q42583]
 +
** [http://www.uniprot.org/uniprot/Q14558 Q14558]
 +
** [http://www.uniprot.org/uniprot/Q55848 Q55848]
 +
** [http://www.uniprot.org/uniprot/Q49042 Q49042]
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** [http://www.uniprot.org/uniprot/O64888 O64888]
 +
** [http://www.uniprot.org/uniprot/Q680A5 Q680A5]
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** [http://www.uniprot.org/uniprot/Q93Z66 Q93Z66]
 
</div>
 
</div>
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{{#set: transcription-direction=negative}}
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{{#set: direction=reversible}}
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{{#set: right-end-position=8416}}
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{{#set: common-name=ribose phosphate diphosphokinase|ribose-phosphate diphosphokinase}}
−
{{#set: left-end-position=4923}}
+
{{#set: ec-number=ec-2.7.6.1}}
−
{{#set: centisome-position=56.99236    }}
+
{{#set: nb gene associated=4}}
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb reaction associated=5}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: nb pathway associated=10}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Revision as of 09:28, 27 August 2019

Reaction PRPPSYN-RXN

  • direction:
    • reversible
  • common-name:
    • ribose phosphate diphosphokinase
    • ribose-phosphate diphosphokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-662, PRPP biosynthesis: PWY0-662
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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